Sequence details NCBI ID: XM_004838219.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vldlr
Gene Name very low density lipoprotein receptor, transcript variant X1
Entrez Gene ID 101709214

Database interlinks

Part of NW_004624736.1 (Scaffold)

For more information consult the page for NW_004624736.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VLDLR ENSCPOG00000007685 (Guinea pig)

Gene Details

very low density lipoprotein receptor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006925, Guinea pig)

Protein Percentage 97.52%
CDS Percentage 94.68%
Ka/Ks Ratio 0.06753 (Ka = 0.0128, Ks = 0.1895)

VLDLR ENSG00000147852 (Human)

Gene Details

very low density lipoprotein receptor

External Links

Gene Match (Ensembl Protein ID: ENSP00000371532, Human)

Protein Percentage 95.88%
CDS Percentage 92.29%
Ka/Ks Ratio 0.06567 (Ka = 0.0198, Ks = 0.3013)

Vldlr ENSMUSG00000024924 (Mouse)

Gene Details

very low density lipoprotein receptor

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000127329, Mouse)

Protein Percentage 94.62%
CDS Percentage 90.03%
Ka/Ks Ratio 0.05909 (Ka = 0.0255, Ks = 0.4319)

Vldlr ENSRNOG00000027491 (Rat)

Gene Details

very low density lipoprotein receptor (Vldlr), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000036229, Rat)

Protein Percentage 94.5%
CDS Percentage 90.19%
Ka/Ks Ratio 0.06445 (Ka = 0.027, Ks = 0.4183)

Genome Location

Sequence Coding sequence

Length: 2622 bp    Location: 7280490..7316862   Strand: +
Raw sequence   
>XM_004838219.1
ATGGGCACGTCCGCGCGCTGGGCGCTCTGGCTGCTGCTCGCGCTGAGCTGGGAGCCCCGGGAGAGCAGCGCCACGGGGACGGGGAGAAAAGCAAAATGTGACCCTTCCCAATTCCAGTGCACGAATGGCCGCTGTATAACTCTCCTGTGGAAATGTGATGGAGATGAAGACTGTGTTGATGGCAGTGATGAAAAAAACTGTGTAAAGAAGACATGTGCTGAGTCTGACTTCGTGTGCAACAACGGCCAGTGTGTCCCCAACCGATGGCAGTGTGATGGGGACCCTGACTGTGAAGATGGCTCCGATGAAAGCCCAGAGCAGTGCCATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGTGCCCGTTCTACTCAGTGTATCCCAGTGTCCTGGAGATGTGATGGTGAAAGTGATTGTGACAGTGGAGAAGATGAAGAAAACTGTGGCAACATAACGTGTAGCCCTGATGAGTTCACTTGCTCCAGTGGCCGCTGCATCTCCAGAAACTTTGTGTGCAATGGCCAGGACGACTGTAACGATGGCAGCGACGAACTCGACTGTGCCCCACCAACCTGCAGTGCCCACGAGTTCCAGTGCAGCACCTCCTCATGCATCCCCCTCAGCTGGGTGTGTGATGATGATGCAGACTGCTCAGACCAGTCTGATGAGTCCCTTGAGCAGTGTGGCCGCCAGCCAGTGATGCACACCAAGTGTCCAGCCAGTGAGATCCAGTGCGGCTCCGGCGAGTGCATCCACAAAAAGTGGCGGTGTGACGGGGATCCTGATTGCAAAGATGGCAGCGATGAGGTTAACTGTCCTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAGGATGGAAGCTGCATCCATGGCAGCAGGCAGTGTAATGGCATCCGAGACTGTGTTGACGGTTCTGATGAAGTCAACTGCAAAAATGCCAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGAAGTGGTGAATGCATAGATATGATCAAAGTTTGTAACCAGGAGCAGGACTGCAGAGACTGGAGTGATGAGCCCCTGAAGGAATGTCATGTTAACGAATGCTTGATAAATAATGGTGGATGTTCCCACATCTGCAAAGACCTAGTCATAGGCTACGAATGTGACTGTGCAGCTGGGTTTGAGCTGATAGATAGGAAGACCTGTGGAGATATTGACGAATGCCAAAATCCGGGAATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAATGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGGAAAAGAACCAAGTTTGATCTTTACTAACCGAAGAGACATTAGGAAGATTGGTTTAGAGAGGAAAGAATATATCCAACTAGTTGAGCAGCTACGAAACACTGTGGCTCTTGATGCCGATATTGCTGCTCAGAAACTGTTCTGGGCTGATCTGAGCCAAAAGGCCATCTTCAGTGCCTCAATTGATGACAAGGTTGGTAGACATGTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGGACCAAGAGAAAGTTCCTGTTTAATTCTGACTTGCGAGAACCTGCCTCCATAGCTGTGGACCCATTGTCTGGCTTTGTTTACTGGTCAGACTGGGGTGAACCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGCCCACTGGTGACTGTGGACATCCAGTGGCCTAACGGAATTACCCTTGACCTTATAAAAAGCCGCCTCTACTGGCTTGATTCCAAGTTGCACATGCTTTCCAGTGTGGACTTGAATGGCCAAGATCGCAGGATAGTCCTAAAGTCTCTGGAGTTCCTGGCTCACCCTCTTGCCCTAACCATATTTGAGGATCGTGTGTACTGGATAGATGGGGAAAATGAAGCAGTTTATGGTGCCAATAAATTCACTGGATCAGAGTTGGCTACTCTAGTCAACAACCTTAATGATGCTCAAGACATCATCGTCTATCATGAACTTGTACAGCCATCAGGTAAAAACTGGTGTGATGAAGACATGGAGAATGGAGGATGTGAATACCTGTGCCTGCCAGCACCACAGATTAATGAACACTCTCCAAAGTATACCTGCTCCTGTCCCAGTGGGTACAGTCTGGAGGAAAATGGGCGACAGTGCCAAAGTACTGCAACCACTGTGGCTTACAGGGAGTCAAAAGATACCAACACAACAGAAATTCTACCAACTAGTGGACTAGTTCTTGGAGGGATCAATGTGACCACAGCAATACCAGAGGTCAGTGTTCCCCCACAAGGAACTTCTGCTGCCTGGGCCATCCTCCCCCTCTTACTCTTAGCAATGGCAGCAGTAGGTGGCTACCTGATGTGGAGGAATTGGCAGAACAAGAACATGAAGAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACAGAAGAAGACCTCTCAATAGACATCGGCAGACACAGTGCTTCTGTTGGACACACGTACCCAGCAATATCAGTCGTAAGCACAGATGATGATCTAGCTTGA

Related Sequences

XP_004838276.1 Protein

Vldlr PREDICTED: very low-density lipoprotein receptor isoform X1 [Heterocephalus glaber]

Length: 873 aa      View alignments
>XP_004838276.1
MGTSARWALWLLLALSWEPRESSATGTGRKAKCDPSQFQCTNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPVSWRCDGESDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCNDGSDELDCAPPTCSAHEFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVMHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNANQCLGPGKFKCRSGECIDMIKVCNQEQDCRDWSDEPLKECHVNECLINNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTVDIQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHELVQPSGKNWCDEDMENGGCEYLCLPAPQINEHSPKYTCSCPSGYSLEENGRQCQSTATTVAYRESKDTNTTEILPTSGLVLGGINVTTAIPEVSVPPQGTSAAWAILPLLLLAMAAVGGYLMWRNWQNKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA