Sequence details NCBI ID: XM_004837904.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col22a1
Gene Name collagen, type XXII, alpha 1
Entrez Gene ID 101716192

Database interlinks

Part of NW_004624735.1 (Scaffold)

For more information consult the page for NW_004624735.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL22A1 ENSCPOG00000000650 (Guinea pig)

Gene Details

collagen, type XXII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000573, Guinea pig)

Protein Percentage 91.21%
CDS Percentage 90.69%
Ka/Ks Ratio 0.24337 (Ka = 0.051, Ks = 0.2094)

COL22A1 ENSG00000169436 (Human)

Gene Details

collagen, type XXII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000303153, Human)

Protein Percentage 87.53%
CDS Percentage 86.01%
Ka/Ks Ratio 0.19927 (Ka = 0.0754, Ks = 0.3784)

Col22a1 ENSMUSG00000079022 (Mouse)

Gene Details

collagen, type XXII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000125069, Mouse)

Protein Percentage 86.47%
CDS Percentage 83.31%
Ka/Ks Ratio 0.15931 (Ka = 0.0843, Ks = 0.5292)

Col22a1 ENSRNOG00000024824 (Rat)

Gene Details

collagen, type XXII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000029936, Rat)

Protein Percentage 86.16%
CDS Percentage 82.54%
Ka/Ks Ratio 0.16233 (Ka = 0.0908, Ks = 0.5596)

Genome Location

Sequence Coding sequence

Length: 4815 bp    Location: 17396498..17627381   Strand: +
Raw sequence   
>XM_004837904.1
ATGGTGGGCCCCCGATGGAGCACTGCAGCCTGCCTCCTCTGGATACTGCTGCTGTGGAGTCAGGACGGCAGCTGCCAGGCCCAGCGGGCAGGCTGCAAGAGTGTGCACTATGACCTGCTTTTCCTCCTGGACACCTCCTCCAGCGTGGGCAAGGGGGACTTTGAGAAGGTGCGGCAGTGGGTGGCCAACTTGGTGGACACATTCGAGGTGGGCCCGGACCACACGCGAGTGGGCGTTGTGCGCTACAGCGACGCGCCCACCACGGCCTTCGAGCTGGGCCGCTTCAGCTCGCGCCAGGAGGTGAAGGCAGCGGCCGGGCGCATCCCGTACCACGGTGGCAACACCAACACCGGCGACGCTCTGCGCTACATCACGGGCCGCAGCTTCTCCCCGCAGGCCGGCGGCCGGCCAGGAAACCGCGCCTTCAAGCAGGTGGCCATCTTGCTGACTGACGGCCGCAGCCAGGACCTGGTGCTGGACGCCGCCGTGGACGCTCATGGGGCGGGCATCCGCGTCTTCGCCGTGGGCGTGGGCGCGGCGCTGAAGGAGGAGCTGGAGGAGATCGCCTCGGAGCCCAAGTCGGCCCACATCTTCCACGTGTCGGACTTCAACGCCATCGACAAGATCCGTGGCAAGCTGCGACGCCGGCTGTGCGAGAATGTGCTCTGCCCAAGTGTCCGTGTTGAAGGAGATCGCTTCAAGCACACCAATGGAGGAACCAAGGAAATCACAGGTTTTGACCTGATGGATCTGTTCAGTGTGAAGGAAATCCTGGGGAAGAGAGAGAACGGAGCCCAGAGTTCCTATGTGCGGATGGGATCCTTTCCAGTGGTGCAGAGGACTGAAGATGTGTTTCCACAAGGTCTCCCTGATGAGTATGCCTTCGTCACCACCTTCCGGTTCCGGAAAACATCTCGGAAAGAAGACTGGTACATCTGGCAGGTCATCGACCAGTATGGCATCCCCCAGGTCTCCATCCGGCTGGATGGCGAGAACAAGGCGGTGGAGTACAATGCGGTGGGCGCCATGAAGGATGCTGTCAGGGTGGTGTTCCGAGGTCCCCGTGTCAATGTCCTCTTTGACCGAGACTGGCACAAGATGGCCCTGAGCATCCAGGCTCAGGACGTTTCCCTGTACGTTGACTGTGCACTGGTGCAGATGCTGCCCATTGAGGAGAGAGAGAACATTGACATCCAGGGCAAGACAGTGATCGGCAAGCGCCTCTACGACAGTGTGCCCATCGATTTCGACCTGCAAAGAATTGTAATTTACTGCGACTCCAGACATGCAGAGCTAGAGACTTGTTGTGACATCGCGTCTGGCCCATGCCAGGTGACTGTGGTGACAGAACCTCCACCTCCACCCCTGCAGCCGCCCACTCCTGGCAGTGAACAGATTGGGTTCTTGAAGACCATCAACTGTTCCTGCCCACCTGGAGAAAAGGGTGAAAGGGGCTTTGATGGCCCTGTGGGACTCCCTGGTCCAAAGGGAGACATGGGAATCACTGGGCCAATGGGCAGTCCTGGACCCAAGGGAGAGAAAGGGGACACGGGCAGAGGATCTTTTGTCCAAGGCAAGAAGGCTGAGAAGGAATCCCTGGGCCTTCCTGGTCCTCCTGGGAGAGATGGCAGCAAAGGCATGAGAGGAGAGCCAGGAGAGCCGGGGGAGCCAGGACTGCCTGGAGAGGTGGGCATGCGGGGTCCCCAAGGACTGCCTGGACTTCCAGGGCCTCCCGGGCACGTTGGGGCTCCGGGACTTCAAGGAGAACGAGGCGAAAGGGGGATTCGAGGAGAAAAGGGAGAGCGAGGCCTGGATGGATTCCCTGGGAAGCCTGGGGAGACAGGAGAGCAGGGAGGACCTGGCCCTCCTGGTGTAGCAGGACCCCAGGGAGAGAAGGGAGACGTGGGACCTGCAGGACCGCCTGGCGTGCCGGGCTCTGTGGTGCAGAGAGAAGGCCTGAAGGGTGAACAGGGAGCTCCAGGTCCAAGAGGTCACCAGGGCCCACCTGGGCCACCAGGAGCTCCAGGTCTGATGGGTCCAGAAGGCAAGGAAGGACCTCCTGGTTTGCAGGGTCTCCGAGGGAAGAAAGGTGACATGGGTGCACCAGGACTCCCGGGATCATCGGGGCTGCAGGGTCCCTCAGGACCCCCCGGTATCCCTGGCCCCCCCGGACCTGGCGGCCCCTCGGGTTTACCTGGAGAGATTGGCTTCCCGGGCAAACCTGGGGCTCCTGGGAATCCTGGGCCACCTGGAAGGGATGGGCTGCGTGGACCACCAGGCCTGCCAGGATCCAAGGGAGAACCAGGAGAAAGAGGAGAAGGTGGCCTGGCTGGGAAGCCTGGACCTCGGGGTGAAGTTGGGGAGCAAGGCCTCGCAGGCCAGTCTGGAGACAAGGGAGAAACTGGCCTCCCAGGTGCTCCAGGGCTCCCAGGTGTTCGAGGAGAGAAGGGAGACCAGGGAGAAAAAGGTGGACTGGGACTTCCTGGACTGAAAGGTGACCGAGGTGAAAAGGGTGAAGCTGGTCCAGCAGGCCCCCCTGGGCTACCTGGAACTACTTCCCCGTTCACACCACACCCAAGAATGCCTGGAGAACAAGGGCCTAAAGGACAGAAGGGCGACCCAGGAGTGCCCGGGGAAGTTTCATTGCAGGGCCCTCCTGGAGAACTAGGTCCTCGGGGACCCACCGGACCTCCGGGTACCAAAGGACAAGATGGTGCCCATGGGGCTCCTGGAGTGGCAGGAAACCCCGGCACTCCTGGACCTGCAGGGCTCCCTGGTCCCGGTGGCCTCCCGGGAAGCATGGGCCCACCTGGCCTCAGAGGCCCCCCTGGGAAAGATGGGGAGCGCGGTGCGAAGGGAACAGCAGGTGAAGAAGGGAACCAAGGGCCAGCTGGCCCCAGGGGTGATCCTGGTACTCCTGGGGTCCCCGGGCCACCTGGAAAAGGGAATGATGGAGAACGGGGCCCACATGGATTGCCTGGACTACCTGGACCCCCAGGAACCAAGGGGGACCAAGGAGCACCCGGGATCCCTGGCTCTCCTGGCAGCCGCGGTGACCCAGGCATCGGGGTTGCTGGCCCCACTGGCCCTTCTGGACCACCAGGAGACAAAGGGCCCCCGGGATCTCGAGGATTGCCTGGATTCCCCGGGCCCCAGGGGCCAGCTGGCCAGGATGGTACACCAGGAAGTCCAGGAGAAAGGGGGCCCCCTGGGAAACCGGGCCCGTCTTCACTACTGTCTCCGGGCGACATAAATCTCTTGGTTAAGGACGTATGCAGTGAGTGCCCTCCTGGTCCACCAGGCCTCCCTGGTCTACCAGGGTTTAAAGGAGACAAAGGCCTCCCAGGAAAGCCAGGCAGAGAAGGCATGGAAGGGAAAAAGGGAGAAGCTGGATCCCAAGGCCCCCCAGGGCCCCCAGGAATAGCTGGACCACAGGGAAACCCAGGAGAGCGGGGTGCAGATGGTGAGGTTGGACAGAAAGGTGATCAGGGTCGTCCTGGAGTTCCAGGTTTCATGGGGCCCCCAGGGATCCCTGGGCCACCAGGAGCAGATGGAATCGCAGGAGCTTCTGGACCACCAGGAATTCAAGGGCCTCCGGGGAAAGAAGGTCCTCCTGGTCCCCAAGGCCCATCTGGAATCCCTGGAATCCCAGGAGAAGAAGGCAAACAAGGCAGAGATGGAAAGCCAGGTCCCCCTGGGGAGCCGGGCAAAGTGGGAGATCCAGGTCTCCCGGGACCGGAGGGACCTCGAGGCTCACCCGGCTTCAAGGGACACACAGGGGACCCTGGTGCTCCTGGTCCCCGGGGAGAACCAGGTGCCACCGGGCCACCTGGCCAGGAAGGGACACCAGGAAAAGAGGGTGACACTGGACCTGCAGGGCCACAGGGTCCCCGAGGACCAAGGGGCCCACTGGGAAACAATGGATCACCAGGCTCCCCAGGTGACCCTGGCCATCCAGGAACCCCCGGCCAGAAGGGAAGCAAAGGAGAAAATGGCAACCCAGGACTTCCTGGCTTCCTGGGCCCTCGAGGGCCTCCGGGAGAAGCAGGAGAGAAAGGTGTGCCAGGCAAAGAGGGTACTCCTGGGAAACCCGGAGAACCAGGAGCCAGAGGAGAAAGGGGAGACCCTGGGATCAAAGGCGACAAAGGACTGCCTGGTGGGAAGGGTCAGCCTGGGGACCCTGGAATCCCAGGCCACAAAGGTCACACAGGTCTGATGGGCCCCCAAGGACCACCTGGGGAAAGCGGACCAGCCGGGCCCCCAGGGCCTCCGGGCCAGCCTGGATTTCCAGGACTGAGGGGGGAGTCTCCATCTGTGGACACCCTGCGGCGGCTTATTCAGGAAGAGCTCGGGAAGCAACTGGAGAGTAGACTTGCCTACCTCCTGGCCCAGATGCAGCCTGCACACATGAAAGTCTCACAAGGCAGACCCGGTCCTCCAGGACCCCCTGGAAAAGATGGTGTTCCTGGCAGGGCAGGACTCATGGGGGAGCCGGGCCGACCTGGCCAGGGGGGTCTGGAAGGACCATCTGGGCCAGTAGGTCCCAAAGGTGAGCGAGGAGCCAAAGGTGATCCAGGTGTACCTGGAGTTGGCCTCCGAGGCGAGACGGGATCCCCTGGCATCCCAGGTCAACCTGGGGAGCCTGGCTATGCTAAGGATGGAGTCCCAGGGAGTCCTGGCCCTCAAGGGGAGACAGGACCTGCTGGACACCCTGGCCCTCCAGGCCCTCCTGGCCCCCCTGGCCTGTGTGACCCCTCCCAGTGCGCCTACTTTGCCAGCCTTGCAGCCCGGCCGGGCAATGTGAAGGGCCCCTAG

Related Sequences

XP_004837961.1 Protein

Col22a1 PREDICTED: collagen alpha-1(XXII) chain [Heterocephalus glaber]

Length: 1604 aa      View alignments
>XP_004837961.1
MVGPRWSTAACLLWILLLWSQDGSCQAQRAGCKSVHYDLLFLLDTSSSVGKGDFEKVRQWVANLVDTFEVGPDHTRVGVVRYSDAPTTAFELGRFSSRQEVKAAAGRIPYHGGNTNTGDALRYITGRSFSPQAGGRPGNRAFKQVAILLTDGRSQDLVLDAAVDAHGAGIRVFAVGVGAALKEELEEIASEPKSAHIFHVSDFNAIDKIRGKLRRRLCENVLCPSVRVEGDRFKHTNGGTKEITGFDLMDLFSVKEILGKRENGAQSSYVRMGSFPVVQRTEDVFPQGLPDEYAFVTTFRFRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKAVEYNAVGAMKDAVRVVFRGPRVNVLFDRDWHKMALSIQAQDVSLYVDCALVQMLPIEERENIDIQGKTVIGKRLYDSVPIDFDLQRIVIYCDSRHAELETCCDIASGPCQVTVVTEPPPPPLQPPTPGSEQIGFLKTINCSCPPGEKGERGFDGPVGLPGPKGDMGITGPMGSPGPKGEKGDTGRGSFVQGKKAEKESLGLPGPPGRDGSKGMRGEPGEPGEPGLPGEVGMRGPQGLPGLPGPPGHVGAPGLQGERGERGIRGEKGERGLDGFPGKPGETGEQGGPGPPGVAGPQGEKGDVGPAGPPGVPGSVVQREGLKGEQGAPGPRGHQGPPGPPGAPGLMGPEGKEGPPGLQGLRGKKGDMGAPGLPGSSGLQGPSGPPGIPGPPGPGGPSGLPGEIGFPGKPGAPGNPGPPGRDGLRGPPGLPGSKGEPGERGEGGLAGKPGPRGEVGEQGLAGQSGDKGETGLPGAPGLPGVRGEKGDQGEKGGLGLPGLKGDRGEKGEAGPAGPPGLPGTTSPFTPHPRMPGEQGPKGQKGDPGVPGEVSLQGPPGELGPRGPTGPPGTKGQDGAHGAPGVAGNPGTPGPAGLPGPGGLPGSMGPPGLRGPPGKDGERGAKGTAGEEGNQGPAGPRGDPGTPGVPGPPGKGNDGERGPHGLPGLPGPPGTKGDQGAPGIPGSPGSRGDPGIGVAGPTGPSGPPGDKGPPGSRGLPGFPGPQGPAGQDGTPGSPGERGPPGKPGPSSLLSPGDINLLVKDVCSECPPGPPGLPGLPGFKGDKGLPGKPGREGMEGKKGEAGSQGPPGPPGIAGPQGNPGERGADGEVGQKGDQGRPGVPGFMGPPGIPGPPGADGIAGASGPPGIQGPPGKEGPPGPQGPSGIPGIPGEEGKQGRDGKPGPPGEPGKVGDPGLPGPEGPRGSPGFKGHTGDPGAPGPRGEPGATGPPGQEGTPGKEGDTGPAGPQGPRGPRGPLGNNGSPGSPGDPGHPGTPGQKGSKGENGNPGLPGFLGPRGPPGEAGEKGVPGKEGTPGKPGEPGARGERGDPGIKGDKGLPGGKGQPGDPGIPGHKGHTGLMGPQGPPGESGPAGPPGPPGQPGFPGLRGESPSVDTLRRLIQEELGKQLESRLAYLLAQMQPAHMKVSQGRPGPPGPPGKDGVPGRAGLMGEPGRPGQGGLEGPSGPVGPKGERGAKGDPGVPGVGLRGETGSPGIPGQPGEPGYAKDGVPGSPGPQGETGPAGHPGPPGPPGPPGLCDPSQCAYFASLAARPGNVKGP