Sequence details NCBI ID: XM_004837865.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lynx1
Gene Name Ly6/neurotoxin 1, transcript variant X2
Entrez Gene ID 101702588

Database interlinks

Part of NW_004624735.1 (Scaffold)

For more information consult the page for NW_004624735.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000003944 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003562, Guinea pig)

Protein Percentage 85.34%
CDS Percentage 89.94%
Ka/Ks Ratio 0.27009 (Ka = 0.072, Ks = 0.2666)

Lynx1 ENSMUSG00000022594 (Mouse)

Gene Details

Ly6/neurotoxin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023259, Mouse)

Protein Percentage 77.59%
CDS Percentage 81.32%
Ka/Ks Ratio 0.12843 (Ka = 0.1124, Ks = 0.8756)

Lynx1 ENSRNOG00000006086 (Rat)

Gene Details

Ly6/neurotoxin 1 (Lynx1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007988, Rat)

Protein Percentage 77.59%
CDS Percentage 81.03%
Ka/Ks Ratio 0.12588 (Ka = 0.1117, Ks = 0.8877)

Genome Location

Sequence Coding sequence

Length: 351 bp    Location: 13881545..13886571   Strand: +
Raw sequence   
>XM_004837865.1
ATGGCGCACCTGCTTGCCCTGCTCCTGGTGGCCGTGGTGGGCCTGCCTCTGGCCCAGGCCCTGGACTGCCACGTGTGTGCCTACAATGGAGACAACTGCTTCAACCCCATGCGTTGCCCCACCATGGTTAGATACTGCATGACCACCCGTACCTACTATACCCCATACAGGATGAAGGTGAGCAAGTCATGCGTGCCCAGCTGCTTCGAGACCGTGTATGATGGCTACTCCAAGCATGCATCCACCACCTCCTGCTGCCAGTATGACCTCTGCAATGGTGCTGGCCTCACTGCCCCAGGGACCCTGGCCTTGGCCTCCATTCTTCTGGCCACCATCTGGGGTCTGATCTAA

Related Sequences

XP_004837922.1 Protein

Lynx1 PREDICTED: ly-6/neurotoxin-like protein 1 isoform X2 [Heterocephalus glaber]

Length: 116 aa      
>XP_004837922.1
MAHLLALLLVAVVGLPLAQALDCHVCAYNGDNCFNPMRCPTMVRYCMTTRTYYTPYRMKVSKSCVPSCFETVYDGYSKHASTTSCCQYDLCNGAGLTAPGTLALASILLATIWGLI