Sequence details NCBI ID: XM_004837630.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cacna1c
Gene Name calcium channel, voltage-dependent, L type, alpha 1C subunit, transcript variant X18
Entrez Gene ID 101717129

Database interlinks

Part of NW_004624735.1 (Scaffold)

For more information consult the page for NW_004624735.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CACNA1C ENSCPOG00000010239 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009195, Guinea pig)

Protein Percentage 96.08%
CDS Percentage 93.05%
Ka/Ks Ratio 0.08111 (Ka = 0.0233, Ks = 0.2873)

CACNA1C ENSG00000151067 (Human)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1C subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000266376, Human)

Protein Percentage 96.14%
CDS Percentage 92.27%
Ka/Ks Ratio 0.04994 (Ka = 0.0191, Ks = 0.3832)

Cacna1c ENSMUSG00000051331 (Mouse)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1C subunit

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000108413, Mouse)

Protein Percentage 95.27%
CDS Percentage 89.74%
Ka/Ks Ratio 0.04526 (Ka = 0.0243, Ks = 0.5372)

Cacna1c ENSRNOG00000007090 (Rat)

Gene Details

calcium channel, voltage-dependent, L type, alpha 1C subunit (Cacna1c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000048790, Rat)

Protein Percentage 94.13%
CDS Percentage 88.64%
Ka/Ks Ratio 0.05448 (Ka = 0.0321, Ks = 0.5896)

Genome Location

Sequence Coding sequence

Length: 6399 bp    Location: 10829863..10201099   Strand: -
Raw sequence   
>XM_004837630.1
ATGGTCAATGAAAATACGAGGATGTACATTCCAGAGGAAAACCACCAAGGTTCCAACTATGGGAGTCCACGCCCAGCTCATGCCAACATGAATGCCAATGCAGCTGCGGGGCTGGCCCCTGAGCACATCCCCACCCCGGGGGCAGCCCTATCCTGGCAAGCAGCCATCGATGCGGCCCGGCAGGCCAAGCTGATGGGCAGTGCTGGGAATGCGACCATCTCCACTGTCAGCTCTACACAGCGGAAGCGGCAGCAGTATGGGAAACCCAAGAAGCAGGGTGGCACGACCGCCACGCGGCCGCCCCGGGCCCTGCTCTGCCTGACTCTGAAGAACCCTATCCGGAGAGCGTGCATAAGCATTGTCGAATGGAAATATCCTTTACCATTTGAAATAATTATTTTACTGACTATTTTTGCCAATTGTGTGGCCTTAGCAATCTATATTCCCTTTCCAGAAGATGATTCCAACGCCACCAATTCCAACCTGGAGCGAGTGGAATATCTCTTTCTCATAATTTTTACTGTGGAAGCATTTTTAAAAGTTATCGCCTATGGACTTCTCTTTCACCCCAATGCTTACCTCCGCAATGGTTGGAACTTACTAGATTTTATCATTGTGGTTGTAGGGCTTTTTAGTGCAATTTTAGAACAAGCAACCAAAGCAGATGGGGCAAATGCTCTAGGAGGGAAAGGCGCTGGATTTGATGTGAAAGCGCTGAGGGCCTTCCGCGTGCTGCGCCCCTTGCGGCTGGTGTCCGGAGTCCCGAGTCTCCAGGTGGTCCTGAACTCTATCATCAAGGCCATGGTGCCCCTGCTGCACATCGCCCTGCTTGTGCTGTTCGTCATCATCATCTATGCGATCATCGGCCTGGAGCTCTTCATGGGGAAGATGCATAAAACATGCTACAACCAGGAGGGCATTGCAGACGTTCCAGCAGAAGAGGACCCCTCCCCCTGTGCTCTTGAGAGTGGCCACGGGCGGCAGTGCCAGAATGGCACGGTGTGCAAGCCCGGGTGGGATGGGCCCAAGCACGGCATCACCAACTTCGACAACTTTGCCTTCGCCATGCTCACAGTGTTCCAGTGCATCACCATGGAGGGCTGGACCGACGTGCTATACTGGGTCAATGATGCCGTAGGAAGGGACTGGCCCTGGATCTATTTTGTTACACTAATCATCATAGGGTCATTTTTTGTACTTAACTTGGTTCTCGGTGTTCTTAGCGGAGAGTTTTCCAAAGAGAGAGAGAAGGCCAAGGCTCGGGGAGATTTCCAGAAGCTTCGAGAGAAACAACAGCTGGAGGAAGATCTCAAAGGCTACCTCGACTGGATCACTCAGGCAGAAGACATCGACCCAGAGAATGAAGACGAAGGCATGGATGAGGAGAAACCCCGAAACATGAGCATGCCCACGAGTGAGACCGAGTCCGTCAACACTGAAAACGTGGCCGGAGGTGACATCGAAGGAGAGAACTGTGGGGCGAGGCTGGCCCACCGGATCTCCAAATCAAAGTTCAGCCGCTACTGGCGCAGGTGGAATCGGTTCTGCAGAAGAAAGTGCCGTGCTGCAGTCAAGTCCAATGTCTTCTACTGGCTGGTGATCTTCCTGGTGTTCCTCAATACACTTACTATTGCCTCGGAACATTACAACCAGCCCCACTGGCTCACGGAAGTGCAAGACACAGCCAATAAGGCCCTGCTGGCCCTGTTTACTGCGGAGATGCTCCTGAAGATGTACAGCCTGGGCCTGCAGGCCTACTTCGTGTCCCTCTTCAACCGCTTCGACTGCTTCATCGTGTGTGGGGGCATCCTGGAGACCATCCTGGTGGAGACCAAGATCATGTCTCCCCTGGGCATCTCTGTGCTGAGATGTGTGCGGCTACTGAGGATATTTAAAATCACAAGGTACTGGAACTCCTTAAGCAACCTGGTAGCATCCTTGCTGAACTCTGTGCGCTCCATCGCCTCCCTGCTCCTACTCCTCTTCCTCTTTATCATCATCTTCTCCCTGCTGGGAATGCAGCTCTTTGGAGGAAAGTTCAACTTTGATGAGATGCAGACCCGGAGGAGCACATTCGATAACTTCCCCCAGTCCCTCCTCACTGTGTTTCAGATCCTGACCGGGGAGGACTGGAATTCGGTGATGTATGATGGGATCATGGCTTATGGCGGCCCCTCTTTTCCAGGGATGTTAGTCTGTATTTACTTCATCATCCTCTTCATCTGTGGAAATTATATCCTACTGAATGTGTTCTTGGCCATTGCTGTGGACAACCTGGCTGATGCTGAGAGCCTCACTTCTGCCCAAAAGGAGGAAGAAGAAGAGAAGGAGAGAAAGAAGCTGGCCAGGACTGCCAGCCCAGAGAAGAAACAGGAGGCAGTGGAGAAGCCAGCAGTGGAGGAGACCAAGGAGGAGAAAATTGAGCTGAAATCCATTACTGCTGATGGGGAGTCCCCACCCACCAAGATCAACGTGGATGACCTCCAGCACAATGAAAATGAGGACAAGAGTCCCTACCCCAACCCAGACGCTGCAGGAGAAGAGGATGAGGAGGAGCCTGAGATGCCTGTCGGGCCCCGTCCACGACCACTCTCTGAGCTACACCTTAAGGAAAAAGCCGTGCCCATGCCAGAAGCCAGCGCATTTTTCATCTTTAGCCCTAGCAACAGGTTTCGCCTCCAGTGCCACCGCATTGTCAATGACACGATCTTCACCAACCTGATCCTCTTCTTCATCCTGCTCAGCAGCATTTCTCTGGCTGCGGAGGACCCCGTACAGCACACCTCCTTCAGGAACCATATCCTAGGCAACGCAGACTATGTCTTCACTAGTATCTTTACCTTAGAGATTATCCTGAAGATGACTGCGTATGGGGCTTTCCTACACAAGGGCTCTTTCTGCCGGAACTACTTCAACATCTTGGACCTGCTGGTGGTCAGCGTGTCCCTCATCTCCTTTGGCATCCAGTCCAGTGCAATCAATGTGGTGAAGATCTTGCGAGTCCTTCGAGTCCTCCGGCCCCTGAGGGCCATCAACAGGGCTAAGGGGCTAAAGCACGTGGTCCAGTGTGTGTTTGTTGCCATCCGGACTATCGGGAATATCGTCATTGTCACCACACTGCTGCAGTTCATGTTTGCCTGCATCGGGGTCCAGCTGTTCAAGGGAAAGCTCTACACCTGCTCTGATAGTTCCAAACAGACCGAGGCAGAATGCAAGGGTAACTACATCACATACAAAGACGGGGAGGTTGACCAACCTATCATCCAGCCCCGCAGCTGGGAGAACAGCAAGTTTGACTTCGACAATGTCCTGGCAGCTATGATGGCCCTCTTCACCGTCTCCACCTTTGAGGGGTGGCCAGAGCTGCTGTACCGCTCCATCGACTCCCACACGGAAGACAAGGGTCCCATCTACAACTACCGTGTGGAGATCTCCATCTTCTTCATTATCTACATCATCATCATTGCCTTCTTCATGATGAACATCTTCGTGGGTTTCGTCATCGTCACCTTCCAGGAGCAGGGAGAACAAGAGTACAAGAACTGTGAGCTGGACAAGAACCAGCGGCAGTGTGTGGAGTATGCCCTCAAGGCCCGGCCCCTGCGCCGGTACATCCCCAAGAACCAGCACCAGTACAAGGTGTGGTATGTGGTCAACTCCACCTACTTTGAGTACCTGATGTTCGTCCTCATCCTGCTGAACACCATCTGCTTGGCCATGCAGCACTACGGCCAGAGCTGCCTGTTCAAAATCGCCATGAACATCCTCAACATGCTCTTCACTGGCCTCTTCACTGTGGAGATGATCCTGAAACTCATTGCCTTCAAACCCAAGCACTATTTCTGTGATGCATGGAATACATTTGACGCCTTGATTGTTGTGGGTAGCATTGTTGATATAGCAATCACCGAGGTAAACAACGCAGAGGAAAACTCCCGCATCTCCATCACCTTCTTCCGCCTCTTCCGGGTCATGCGCCTGGTCAAGCTGCTGAGCCGCGGGGAGGGCATCCGGACACTGCTGTGGACCTTCATCAAGTCCTTTCAGGCCTTGCCCTATGTGGCCCTTCTAATAGTGATGCTGTTCTTCATCTACGCCGTGATTGGCATGCAGGTGTTTGGAAAGATTGCCTTGAATGACACCACCGAGATCAACCGGAACAACAACTTTCAGACCTTCCCCCAAGCCGTGCTGCTGCTGTTCAGGTGTGCCACAGGGGAGGCCTGGCAGGACATCATGCTGGCCTGCATGCCAGGCAAGAAATGCGCCCCAGAGTCCGAGCCCAGCAATAGCACGGAAGGAGAGACGCCCTGCGGCAGCAGCTTTGCTGTCTTCTATTTCATCAGCTTCTACATGCTCTGTGCCTTCCTGATCATCAACCTCTTTGTAGCCGTCATCATGGACAACTTTGACTACCTGACGAGAGACTGGTCAATCCTTGGTCCCCACCATCTAGATGAATTTAAAAGAATCTGGGCAGAATATGACCCCGAAGCCAAGGGTCGTATCAAACACCTGGATGTGGTGACCCTCCTCCGACGGATTCAGCCTCCTCTGGGCTTTGGGAAGCTGTGTCCTCACCGTGTGGCCTGCAAACGCCTCGTCTCCATGAACATGCCTCTGAACAGTGATGGGACAGTCATGTTCAATGCCACTCTGTTTGCCCTGGTCAGGACAGCCCTGAGGATCAAAACGGAAGGAAACCTAGAACAAGCCAACGAGGAGCTGCGTGCGATCATCAAGAAGATCTGGAAGCGGACCAGCATGAAGCTGCTGGACCAAGTGGTGCCCCCTGCTGGTGATGATGAGGTCACAGTTGGCAAGTTCTACGCTACTTTCCTGATCCAAGAGTACTTCCGGAAATTCAAGAAGCGAAAAGAGCAAGGGCTTGTGGGCAAGCCCTCCCAGAGGAACGCTCTGTCCCTGCAGGCTGGCTTGCGCACACTGCACGACATCGGGCCTGAAATCCGACGAGCCATCTCTGGAGATCTGACTGCCGAGGAAGAGCTAGACAAGGCCATGAAGGAAGCTGTGTCTGCTGCCTCTGAAGATGACATCTTCAGGAGGGCCGGTGGTCTGTTCGGCAACCACGTCAGCTACTACCAAAGCGACAGCCGGAGCACCTTCCCCCAGACCTTCACCACCCAGCGCCCACTGCACATCAACAAGGCGGGCAGCAACCAAGGCGACACTGAGTCGCCCTCCCATGAGAAGCTGGTGGACTCCACCTTCACCCCCAGCAGCTACTCGTCCACTGGCTCCAACGCCAACATCAACAACGCCAACAACACTGCCCTGGGCCGCTTCCCCCATCCCGCCGGCTACGCCAGCACAGTCAGCACTGTGGAGGGCCACGGGCCCCCCTCATCTCCTGCCGCCTGGGCACAGGAGACCACAAGGAAGCTCGGCACCATGAGGTGCCACTCCCGGGAGAGCCAGATAGCTGTGGTATGTCAGGAGGAGGCTTCTCAGGACAAGACCTATGACGTGGAGCTGAATGAAAATGCTGAATACCGCAGCGAGCCCACCCTGCTCTCCACAGAGATGCTCACCTACCAGGATGATGAAAATCGACAACTGACACCCCCCGAGGAAGACAAGAGGGACACCCGGCCCTCTCCAAAGAGGGGTTTCCTCCGCTCTGCCTCCCTAGGTCGAAGAGCCTCCTTCCACCTGGAGTGTTTAAAGCGACAGAAGAATCACGGGGGTGACATTTCTCAGAAGACAGTCTTGCCCTTGCACCTGGTTCATCATCAGGCGCTGGCCGTGGCCGGCCTGAGCCCCCTCCTCCAGAGAAGCCATTCCCCGACCACGTTCCCCAGGCCGAGCGCCACGCCCCCCGCCACGCCCGCGAGCCGAGCCTGGGCCCCGCAGCCCATCCCCACCCTGCGGCTAGAGGGCGCCGAGTCCAGCGAGAAACTCAACAGCAGCTTCCCGTCCATCCACTGCAGCTCCTGGTCAGAGGATGCCAGCCCCTGTGGCGGGGGCAGCAGCACAGCACGGAGAGCCCGGCCCGTCTCCCTCATGGTGCCCAGCCAGGCCGGGGCCCCGGGGAGACAGTTCCACGGCAGTGCCAGCAGCCTGGTAGAGGCGGTCTTGATTTCAGAAGGACTGGGTCAGTTTGCTCAAGATCCCAAGTTCATCGAGGTCGCAACCCAGGAGCTGGCTGACGCCTGCGATATGACCATAGAGGAGATGGAGAACGCAGCCGACAACATCCTCAGCGGGGGCGGCCCTCAGAGCCCCAACGGCACCCTCTTACCTTTTGTGAACTGCAGGGACCCAGGGCAGGACCGGGCGGGCGGCGGCGACGAGGACGAGGGCTGTGCGCGCGCCCTGGGGCGCGGCCGGAGCGAGGAGGAGCTCGCGGACAGCAGGGTCCACGTCCGCAGCCTGTAG

Related Sequences

XP_004837687.1 Protein

Cacna1c PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1C isoform X18 [Heterocephalus glaber]

Length: 2132 aa      View alignments
>XP_004837687.1
MVNENTRMYIPEENHQGSNYGSPRPAHANMNANAAAGLAPEHIPTPGAALSWQAAIDAARQAKLMGSAGNATISTVSSTQRKRQQYGKPKKQGGTTATRPPRALLCLTLKNPIRRACISIVEWKYPLPFEIIILLTIFANCVALAIYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKADGANALGGKGAGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCYNQEGIADVPAEEDPSPCALESGHGRQCQNGTVCKPGWDGPKHGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAVGRDWPWIYFVTLIIIGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENEDEGMDEEKPRNMSMPTSETESVNTENVAGGDIEGENCGARLAHRISKSKFSRYWRRWNRFCRRKCRAAVKSNVFYWLVIFLVFLNTLTIASEHYNQPHWLTEVQDTANKALLALFTAEMLLKMYSLGLQAYFVSLFNRFDCFIVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKERKKLARTASPEKKQEAVEKPAVEETKEEKIELKSITADGESPPTKINVDDLQHNENEDKSPYPNPDAAGEEDEEEPEMPVGPRPRPLSELHLKEKAVPMPEASAFFIFSPSNRFRLQCHRIVNDTIFTNLILFFILLSSISLAAEDPVQHTSFRNHILGNADYVFTSIFTLEIILKMTAYGAFLHKGSFCRNYFNILDLLVVSVSLISFGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACIGVQLFKGKLYTCSDSSKQTEAECKGNYITYKDGEVDQPIIQPRSWENSKFDFDNVLAAMMALFTVSTFEGWPELLYRSIDSHTEDKGPIYNYRVEISIFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNQHQYKVWYVVNSTYFEYLMFVLILLNTICLAMQHYGQSCLFKIAMNILNMLFTGLFTVEMILKLIAFKPKHYFCDAWNTFDALIVVGSIVDIAITEVNNAEENSRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALNDTTEINRNNNFQTFPQAVLLLFRCATGEAWQDIMLACMPGKKCAPESEPSNSTEGETPCGSSFAVFYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANEELRAIIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKPSQRNALSLQAGLRTLHDIGPEIRRAISGDLTAEEELDKAMKEAVSAASEDDIFRRAGGLFGNHVSYYQSDSRSTFPQTFTTQRPLHINKAGSNQGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRFPHPAGYASTVSTVEGHGPPSSPAAWAQETTRKLGTMRCHSRESQIAVVCQEEASQDKTYDVELNENAEYRSEPTLLSTEMLTYQDDENRQLTPPEEDKRDTRPSPKRGFLRSASLGRRASFHLECLKRQKNHGGDISQKTVLPLHLVHHQALAVAGLSPLLQRSHSPTTFPRPSATPPATPASRAWAPQPIPTLRLEGAESSEKLNSSFPSIHCSSWSEDASPCGGGSSTARRARPVSLMVPSQAGAPGRQFHGSASSLVEAVLISEGLGQFAQDPKFIEVATQELADACDMTIEEMENAADNILSGGGPQSPNGTLLPFVNCRDPGQDRAGGGDEDEGCARALGRGRSEEELADSRVHVRSL