Sequence details NCBI ID: XM_004837587.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Usp18
Gene Name ubiquitin specific peptidase 18, transcript variant X1
Entrez Gene ID 101708130

Database interlinks

Part of NW_004624735.1 (Scaffold)

For more information consult the page for NW_004624735.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000000556 (Guinea pig)

Gene Details

Ubiquitin carboxyl-terminal hydrolase

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000488, Guinea pig)

Protein Percentage 86.22%
CDS Percentage 89.01%
Ka/Ks Ratio 0.25475 (Ka = 0.074, Ks = 0.2907)

Usp18 ENSMUSG00000030107 (Mouse)

Gene Details

ubiquitin specific peptidase 18

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032198, Mouse)

Protein Percentage 72.33%
CDS Percentage 77.9%
Ka/Ks Ratio 0.2632 (Ka = 0.1788, Ks = 0.6792)

Usp18 ENSRNOG00000037198 (Rat)

Gene Details

ubiquitin specific peptidase 18 (Usp18), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053020, Rat)

Protein Percentage 71.87%
CDS Percentage 77.81%
Ka/Ks Ratio 0.27412 (Ka = 0.1824, Ks = 0.6653)

Genome Location

Sequence Coding sequence

Length: 1116 bp    Location: 9187501..9158597   Strand: -
Raw sequence   
>XM_004837587.1
ATGGCGCTTGGGTTCCTGGGGGAAACGTGCCAGTCAACCCTGGCTGAGTCTCAGCAGTGTTCAGGAGAATCCTTGGAGAAGAAGGAAGAGAACAGAGACATGAAGAGGAAGAGAGAGCAGCCAAGAGGTCTCAGTGCCTGGGACCACCCTCACGGCCTGGTTGGTTTACACAACATTGGACAGACCTGTTGCCTTAATTCCTTGATTCAGGTGTTCATAATGAACACAGACTTCACGAAGATATTGAAGAGGATGACAGTGCCAAAGGTCTCAGAAGAGCAAAAGAGAAGTGTCCCCTTCCAGCTGCTGTTGCTGCTGGAGAAGATGCGGGACAGCCGGCAGAAGGCGGTGTGCCCCACGGAGCTGGCCTACTGCCTCCAGAAGAACAATGTGCCACTTTTTGTCCAGCATGATGCTGCTCAACTGTACCTTATAGTCTGGAACCTAATCAAGGACCAAATCACTGATAAGGACTTGGCAGAGAGGCTGCAGGACTTGTACACTATCTGGGTGAAAGATACCTTGGTTTGCCTAGACTGCACCGTGGAAAGCAGCAGAGACAGTAGCTTGCTGACCCTCCCTCTTTCTCTTTTTGACATGGACTCAAAACCCCTTAGAACATTGGAAGACGCCCTGCGCCATTTCTTCCACCCCAGGGAGTTATGCAACAAAAGCAAATTCTTCTGTCAGAACTGTGGGAGGAAGACACAAGGGACACAGGCCTTGAAGCTGACCCGTTTGCCCCAAACTTTGACCATCCATTTCATGAGATTCTCCATCAAAAATTCAAGGGCAGAAAAGGTCTGCCATTCATTGTATTTCCCTGAGAGCCTGGATTTCAGTCAGGTTCTTCCAAGTGAGCAGGACATCAGTGAAGCAGAGGAACAGGATGAAGGGCAGTATGAACTCTTTGCTGTGATTGCCCACAGTGGGATGGCTGACTTCGGTCATTACTGTGCCTATGTCCGGAATCCTGTGGATGGAAAATGGTTCTGCTTCAATGACTCCCATGTTAGTTGGGTGTCCTGGAAAGACATCCAGTGCACCTATGGAAATCACAGCTACCGCTGGCAGGAAACTGCATACCTTCTGGTTTACATGAAGACCAAGTCCTGA

Related Sequences

XP_004837644.1 Protein

Usp18 PREDICTED: ubl carboxyl-terminal hydrolase 18 isoform X1 [Heterocephalus glaber]

Length: 371 aa      
>XP_004837644.1
MALGFLGETCQSTLAESQQCSGESLEKKEENRDMKRKREQPRGLSAWDHPHGLVGLHNIGQTCCLNSLIQVFIMNTDFTKILKRMTVPKVSEEQKRSVPFQLLLLLEKMRDSRQKAVCPTELAYCLQKNNVPLFVQHDAAQLYLIVWNLIKDQITDKDLAERLQDLYTIWVKDTLVCLDCTVESSRDSSLLTLPLSLFDMDSKPLRTLEDALRHFFHPRELCNKSKFFCQNCGRKTQGTQALKLTRLPQTLTIHFMRFSIKNSRAEKVCHSLYFPESLDFSQVLPSEQDISEAEEQDEGQYELFAVIAHSGMADFGHYCAYVRNPVDGKWFCFNDSHVSWVSWKDIQCTYGNHSYRWQETAYLLVYMKTKS