Details from NCBI annotation

Gene Symbol Tdp1
Gene Name tyrosyl-DNA phosphodiesterase 1
Entrez Gene ID 101712310

Database interlinks

Part of NW_004624734.1 (Scaffold)

For more information consult the page for NW_004624734.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TDP1 ENSCPOG00000012118 (Guinea pig)

Gene Details

tyrosyl-DNA phosphodiesterase 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010899, Guinea pig)

Protein Percentage 89.17%
CDS Percentage 90.76%
Ka/Ks Ratio 0.22195 (Ka = 0.0545, Ks = 0.2455)

TDP1 ENSG00000042088 (Human)

Gene Details

tyrosyl-DNA phosphodiesterase 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000337353, Human)

Protein Percentage 87.55%
CDS Percentage 86.32%
Ka/Ks Ratio 0.14881 (Ka = 0.0683, Ks = 0.459)

Tdp1 ENSMUSG00000021177 (Mouse)

Gene Details

tyrosyl-DNA phosphodiesterase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000118656, Mouse)

Protein Percentage 83.88%
CDS Percentage 82.23%
Ka/Ks Ratio 0.13919 (Ka = 0.0958, Ks = 0.6883)

Tdp1 ENSRNOG00000003831 (Rat)

Gene Details

tyrosyl-DNA phosphodiesterase 1 (Tdp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005167, Rat)

Protein Percentage 82.97%
CDS Percentage 82.48%
Ka/Ks Ratio 0.16937 (Ka = 0.1041, Ks = 0.6147)

Genome Location

Sequence Coding sequence

Length: 1641 bp    Location: 12414784..12331699   Strand: -
>XM_004837485.1
ATGTCTCAGGAAGGCAATTATGGGAGATGGACAATATCCAGTAGTGAGGAGAGTGAGGATGAAAAGCCCGAACCAGACAAGCCCTCTACCTCTTCCGTCCCCTGTGCTGGGCAGGGAGCAGTGAAGGAGCTGAGCTATACCTGCTCCGAGGCTCGTAAGGCTGCACACAGGAGGCAGATCTCACCAGTGAAATTCAGCAACGCAGATTCGGTTTCACCTGCCAAAAAGCAGAGAAGTAGTTCCCAGGAAGACCTCGGCTGGTGTCTCTCCAGCAGTGATGATGAGCGCGAACCAGAAACGCAGCAAAAGCAGGCTGAGCACGTGGTGGTCAAAGAGGAAAAAGATATCCCCTCTCCCAAAGATGGTGCTCCTCAAAGAACTGGAAATCATGGCCCCCCTGCCAGCCATAGGCTAAAAGAGGAGGAAGATGATTATGAGACGTCAGGAGAAGGCCAGGACATTTGGGACATGTTGGATAAAGGAAACCCCTTCCAATTCTACCTCACTAGAGTCTCAGGAATTAAGCCGAAATATAACTCCAAAGCCCTCCATATCAAAGATATTTTATCTCCTCTATTTGGGACACTTGTTTCCTCAGCTCAGTTTAACTACTGCTTTGACGTGGACTGGCTTGTAAAACAGTATCCACCAGAATTCAGAAAGAAACCAATCCTGCTTGTACATGGCGATAAACGAGAAGCTAAGGCCCATTTGCATGCCCAGGCAAAGCCTTATGCCAACATTTCCCTGTGCCAGGCGAAGTTGGATATTGCATTTGGAACACACCACACTAAAATGATGTTACTACTGTATGAAGAAGGCCTCCGGGTCGTCATCCACACCTCCAACATCATCCGTGAAGACTGGCACCAGAAAACCCAAGGAATATGGTTGAGCCCCTTGTATCCTCGAATTGACCATGGAACTCAGGGATCTGGAGAATCAAAAACACATTTTAAAGCTGATCTCATCAGTTACTTGACGGCTTATAATGCTCCTCCTCTCCAGGAATGGATAGATACCATCCAGGAGCATGATCTCTCTGAAACAAATGTTTACCTTATTGGCTCAACCCCTGGACGTTTTCAAGGAAGTCAAAAAGATAACTGGGGACATTTTAGGCTTAGAAAGATCTACCCTTCTGTGGAAAATGTGCGGACCAGCTTAGAAGGATATCCAGCTGGGGGCTCTCTTCCCTATAGTATCCAGACAGCTGAGAAACAGAATTGGCTACATTCCTACTTTCACAAGTGGTCGGCTGATACGTCTGGCCGCAGCAATGCCATGCCGCACATCAAGACTTACATGAGGCTCTCTCCAAACTCCAGCAGAATCGCCTGGTTCCTTGTCACAAGTGCAAACCTGTCCAAGGCCGCATGGGGAGTGCTGGAGAAGAACGGCACCCAGCTGATGATCCGTTCCTACGAGCTCGGGGTCCTTTTCCTCCCTTCAGCATTTGGCCTGGCCAGCTTCAAGGTGAAGCAGAAATTCTCCTCTGGCAGCCAGGAGCTTGCACCTCCCTTCCCTGTGCCATACGACCTGCCTCCGGAACTATACGGAAGTAAAGACCGGCCATGGATTTGGAACATTCCTTATGTCAAAGCACCAGATAGACACGGGAATATGTGGGTGCCCTCCTGA

Related Sequences

XP_004837542.1 Protein

Tdp1 PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Heterocephalus glaber]

Length: 546 aa      View alignments
>XP_004837542.1
MSQEGNYGRWTISSSEESEDEKPEPDKPSTSSVPCAGQGAVKELSYTCSEARKAAHRRQISPVKFSNADSVSPAKKQRSSSQEDLGWCLSSSDDEREPETQQKQAEHVVVKEEKDIPSPKDGAPQRTGNHGPPASHRLKEEEDDYETSGEGQDIWDMLDKGNPFQFYLTRVSGIKPKYNSKALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNIIREDWHQKTQGIWLSPLYPRIDHGTQGSGESKTHFKADLISYLTAYNAPPLQEWIDTIQEHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLRKIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTSGRSNAMPHIKTYMRLSPNSSRIAWFLVTSANLSKAAWGVLEKNGTQLMIRSYELGVLFLPSAFGLASFKVKQKFSSGSQELAPPFPVPYDLPPELYGSKDRPWIWNIPYVKAPDRHGNMWVPS