Sequence details NCBI ID: XM_004837443.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Six1
Gene Name SIX homeobox 1
Entrez Gene ID 101720008

Database interlinks

Part of NW_004624734.1 (Scaffold)

For more information consult the page for NW_004624734.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SIX1 ENSCPOG00000015548 (Guinea pig)

Gene Details

SIX homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014020, Guinea pig)

Protein Percentage 99.3%
CDS Percentage 96.36%
Ka/Ks Ratio 0.01488 (Ka = 0.0029, Ks = 0.1977)

SIX1 ENSG00000126778 (Human)

Gene Details

SIX homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000247182, Human)

Protein Percentage 99.65%
CDS Percentage 94.48%
Ka/Ks Ratio 0.00406 (Ka = 0.0015, Ks = 0.3596)

Six1 ENSMUSG00000051367 (Mouse)

Gene Details

sine oculis-related homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000059026, Mouse)

Protein Percentage 99.65%
CDS Percentage 93.54%
Ka/Ks Ratio 0.00354 (Ka = 0.0015, Ks = 0.4175)

Six1 ENSRNOG00000022777 (Rat)

Gene Details

SIX homeobox 1 (Six1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000037345, Rat)

Protein Percentage 99.65%
CDS Percentage 93.9%
Ka/Ks Ratio 0.00399 (Ka = 0.0015, Ks = 0.3728)

Genome Location

Sequence Coding sequence

Length: 855 bp    Location: 40453770..40456931   Strand: +
Raw sequence   
>XM_004837443.1
ATGTCGATGCTGCCGTCGTTCGGTTTCACGCAGGAGCAAGTGGCGTGCGTGTGTGAGGTCCTGCAGCAGGGCGGGAACCTGGAGCGCCTGGGCAGGTTCCTGTGGTCGCTGCCTGCCTGCGACCACCTGCATAAGAACGAGAGCGTGCTCAAGGCCAAGGCGGTTGTCGCCTTCCATCGGGGCAACTTCCGCGAGCTCTACAAGATCCTGGAGAGCCACCAGTTCTCGCCTCACAACCATCCCAAGCTGCAGCAACTGTGGCTGAAAGCGCACTACGTGGAGGCCGAGAAGCTTCGCGGGCGACCCCTGGGCGCCGTGGGCAAATATCGGGTGCGCCGAAAATTCCCCCTACCGCGCACCATTTGGGACGGCGAGGAGACCAGCTACTGCTTCAAGGAGAAATCGCGGGGCGTGCTGCGGGAGTGGTACGCGCACAACCCCTACCCCTCGCCGCGGGAGAAGCGGGAGCTGGCCGAGGCCACCGGCCTCACCACGACCCAGGTCAGCAACTGGTTTAAGAACCGGAGGCAAAGAGACCGGGCCGCCGAGGCCAAGGAAAGGGAGAACACTGAAAACAATAACTCCTCCTCCAACAAGCAGAATCAACTCTCTCCGCTGGAAGGGGGCAAGCCGCTCATGTCCAGCTCAGAAGAGGAATTCTCACCTCCCCAAAGTCCAGACCAGAACTCGGTCCTTCTGCTGCAGGGCAATATGGGCCACGCCAGGAGCTCAAACTATTCTCTCCCAGGCCTAACGGCCTCGCAGCCCAGCCATGGCCTGCAGGCCCACCAGCATCAGCTCCAGGACTCTCTGCTGGGCCCTCTCACCTCCAGTCTGGTGGACTTGGGCTCCTAA

Related Sequences

XP_004837500.1 Protein

Six1 PREDICTED: homeobox protein SIX1 [Heterocephalus glaber]

Length: 284 aa      View alignments
>XP_004837500.1
MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENTENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLPGLTASQPSHGLQAHQHQLQDSLLGPLTSSLVDLGS