Sequence details NCBI ID: XM_004837248.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Papln
Gene Name papilin, proteoglycan-like sulfated glycoprotein, transcript variant X2
Entrez Gene ID 101715641

Database interlinks

Part of NW_004624734.1 (Scaffold)

For more information consult the page for NW_004624734.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PAPLN ENSCPOG00000019279 (Guinea pig)

Gene Details

papilin, proteoglycan-like sulfated glycoprotein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000021142, Guinea pig)

Protein Percentage 84.16%
CDS Percentage 88.12%
Ka/Ks Ratio 0.26717 (Ka = 0.0844, Ks = 0.3158)

PAPLN ENSG00000100767 (Human)

Gene Details

papilin, proteoglycan-like sulfated glycoprotein

External Links

Gene Match (Ensembl Protein ID: ENSP00000345395, Human)

Protein Percentage 74.94%
CDS Percentage 80.32%
Ka/Ks Ratio 0.24043 (Ka = 0.1514, Ks = 0.6299)

Papln ENSMUSG00000021223 (Mouse)

Gene Details

papilin, proteoglycan-like sulfated glycoprotein

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000113806, Mouse)

Protein Percentage 71.51%
CDS Percentage 76.48%
Ka/Ks Ratio 0.21053 (Ka = 0.1805, Ks = 0.8573)

Papln ENSRNOG00000009448 (Rat)

Gene Details

Protein Papln

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000059411, Rat)

Protein Percentage 71.11%
CDS Percentage 76.48%
Ka/Ks Ratio 0.2218 (Ka = 0.1836, Ks = 0.8277)

Genome Location

Sequence Coding sequence

Length: 3975 bp    Location: 28171980..28145006   Strand: -
Raw sequence   
>XM_004837248.1
ATGCGGCTGTTCCTGCTCTTGCCCCTCCTGCTGGCTTCGGCGTCCGGGTCCTCGGCTCCTGAGGCTCGGCCGCAGAGTGACACCTGGGGCCCCTGGGGTGAGTGGAGCCCCTGCAGCCGGACCTGCGGAGGGGGCATCAGCTTCCGGGAGCGGCCCTGCTACTCCCAGAGGAAGGATGGAGTCACCAGCTGCGTGGGCCCCGCCCGGAGCCATCGCACTTGCCACACTGAGAGCTGCTCCAACGGCGCGCGGGACTTCAGGGCCGAGCAGTGCGCGGAGCTGGACGGTGCCTTGTTCCATGGCCGGCAGTACAGGTGGCTGCCCTACTATGGCGCCCCAAACAAGTGTGAGCTGAACTGCATCCCCGAGGGGGAGAACTTCTACTATAAGCACCAGGAGGCTGTGCTGGACGGGACGCCCTGTGAGCCCAGTGGACGTGATGTCTGTGTGGATGGCCGCTGCCGGGTTGTTGGCTGTGACCACGAGCTGGACTCATCCAAGGAGGAGGACAAGTGTCTGCAGTGCGGCGGGGACGGCACAGCCTGCTACTCGGTCACAGGCACCTTTGATGCCAATGACCTCAGTAGAGGCTACAACCGGATTTTCATCATTCCTGCCGGGGCGACCAGCATCCACATTGAGGAGTCTGCGGCCAGCAGGAACTTCCTGGCCGTGAGGAGCGTCCGTGGGGAGTACTACCTCAATGGGCACTGGGCCATCTCGGAGCCCAGGGCCCTGCCAGTGGCCAGCACCATCCTGCACTACGAACGGGGTGCCGACGGCGACTTGGCCCCTGAGCGGCTCCAGGCCCGGGGCCCCACGTCGGAGCCCCTGATTATCGAGCTCATCAGCCAGGAGGCCAACCCCGGTGTGCACTACGAGTACTACCTGCCCCTGCGTGGCCCTGGGTCCAGCCAGGGCTTCAGCTGGAGTCATACCTCGTGGGGTGACTGCAGCGTGGAGTGTGGTGGAGGCCACCAGTCCCGCCTGGTGTTCTGCACCAGCGACAGCGAGCCCTACCCCTACCACATGTGCCAGCGCCAGCCTCGGCCAGCTGACCGCCGCCCCTGCAACTCCCACCCTTGCCCGCAGACCAAGCGCTGGAAGGTAGGGCTGTGGGCACCCTGCTCTGCCACCTGCGGGGGCGGCTTCCAGTCCCGCTCGGTCTACTGTGTCTCATCTGATGGCGCTGGAGGCCAGGAGGCTGCTGAGGAGGCTGAGTGTGCCGGCCTGCCCGGGAAGCCCCCTTCCACACAGGCTTGCAACCTGCAGCGCTGCGCAGCCTGGAGCGCCGGGCCCTGGGAAGAGTGTTCTGTCACCTGCGGTGCTGGCATCCGAAGGCGGAGTGTGACTTGTCTGGGTGACGAAGGGTCCCTGTTCCCTGCCTCTGCCTGTTCCTTGGAGGACCGACCCCCCCTCATGGAGACCTGTGTGCAAGCAGCCTGTCCCCTCAGTGACCAGGCCTGGCGTGTCAGCGCCTGGGGTTTATGCTCCAAGAGCTGCAGCTCAGGCATTCGGAGGCGACAGGTCATCTGTGCCATCGGGCCACCCAACCACTGTAGGAACCTGCAGCAGTCGAAGCCCAGGGATGTGGAGCTCTGTAACATGCAGCCCTGCCATCTTCCTCAGGAGGTCCCAAGTGTGCAGGACTCGCATGCCCACCCCAGGGGCCCCTGGATGCCTTTGGGCCCTCGGGAGGCCCTCGCCTCAGGTGAGGAGCAGAGTGGCCTCCCACCCAGGCTGCTATCTTTCTGTGAGTGGCACCTGGAGGTGGAAGTCAAGGGTGGCGCAGTGGGGAGGGGCCTGGAGGATGGAAGGAGGTGGGTGGGAGGTGGACATGGGAGCTGGGTGGACGCACTGGCCTGGTTTTGCTTCCCCTTTCTAGACTCCAGAGACCAGCGACCCTCGGTCCCAAATAGACCCAGGGGACTCGGCGGCTCACCACCTTCAGCTCCAGGCCCAACCCCACCTCTGCAGCAGCCCCCAAGGTCTGGCTTGGGGGCCCAAGACTGCAGGCAAGGCCCCTACGGGTGCTGCCCCGATGGCCGCACAGCCTCACTTGGGCCCCAAGGGCAAGGCTGTCCCAGAACTGAGGTCTGGTGTCAGCAGAGCAGGTATGGGTGCTGCCCTGACGGGGTGTCTGTGGCCAAGGGACCCCAGCAGGCTGGCTGTGTGAGGTCTTATGGCAGCAACGATGCTGGGAGGAGACCGGGCTCCGAGGCAGTGCCTTCTACTGCCTCCGAAGCCCACAGGCCCCAGACCCAGCAGAATGAACCTGCTGCGTGTCGGGGCTCCCAGTTTGGCTGTTGCTATGACAACATGGCCTCTGCGGCTGGCCCCCTTGGAGAAGGGTGCTCAGGCCAGCCCAGCTCCGCCTACCCAGTGCGGTGCCTGCTGCCCAGCGCCCTCGGCTCCTGCACAGACTGGGCCCCCCGGTGGTACTTCATCCCCTCCGTGGGCCTGTGTAACCGGTTCTGGTATGGAGGCTGCCACGGCAATGCCAACAACTTTGGCTCAGAACAGGAGTGCATGAGCAGCTGCCGGGGCACCCAGCATGGGCTCCACCACCCCGACCCTGGGGCCACTGGCCCGGGCACCCACACAGATGGCCGTGGCAGTGGTCCCAGAGGCCAGCAGGAGATCAGCAGGCACAGGCCGGGGGACACAGACCAGAGACTGTTGCCATCTTCTGGAGGCCCCCGGCAAAGAGAACAGGAGCCTTTGCCAGGGGAGGCCCAGCCGACCCTTGCCTTTGGAGAATGGCCCAAGGGCCAGGACATTGGAGCCAGGACCCCAGGACTGGGCAGAGACCCCAGATGGCCAGTGCCACCTTCTCCCAGCTCCTCTTACAGGATCAACTTGGCAGGCTCGGAGCCCTCCATGGTGCAGGCAGCCCTGGGGCAGTTGATACAGCTCTTCTGCCCCACTGATGCCTCCCTGGAATCCCAGGCTGGGTGGCAGAAGGATGGCCAGCCCATCTCCTCTGACAGGCACCAGCTGCAGTCTGACGGCTCCCTGGTCATCAGCCCCCTGCGGGCAGAGGATGCTGGCATCTATACCTGTGGCGGCAACAGGCCTGGCCATGCTTCCCGGAAGATCCAGCTTCACGTCACAGGGGCTGACATAGCAGTGCCATCTGAGACTGAGCCAAGGCACTTCTCTGGGACCAGGGACCCAGCCCGAGGCCAAGGTCCTCGGGACTCCGTCCTAGGGGGACGTGCGGTAGTCCCCTCTCCACAGCCACGACCTGCAACCAGGCTGCGTCTGGATGGGACCCAGCCTGGGGTGGTGGATGCCAGTCCAGGCCAGCGGGTCCGCCTGAGCTGCCGCTCTGAAGGCTTCCCACCCCCAGTCATCGAGTGGCAGAGGGATGGGCAGCCCGTCGCCTCCCCCAGACACCAGATGCAGCCAGATGGCTCTTTGGTCATCAGCCAAGTGGCTGTAGAAGATGGTGGCTTCTATGCCTGTGTTGCTTTCAATGGGCAGGACCGAGACCAGCGCTGGGTCCAGCTCAGAGTTCTGGGAGAGCTGACAATCACAGGGTTGCCGCCTAGTGTGACAGTGTCAGAGGGTGACACAGCCAGGCTGCCTTGTGTGGTGGGAGATGAAAGTGTGAACATCAGATGGTCCAGGAATGGGGTGCCAGTGCAGGCTGACGGCCGCCGAGTGCACCAGTCCCCAGACGGTACGCTGCTGATCCACAACCTGCGGGCCCGGGACGAAGGATCCTACACCTGCAGCGCCTACCGTGGGAGCCAGGCAGTCAGCCGCAGCACCGAGGTGAAGGTGGCTGCCCCAGCAGCGACCGCCCCGTCCAGGGAAGCCGGCAGGGATTGCATTGATCAGCCCGAGTTGGCCAACTGTGACTTGATCCTGCAGGCCCAGCTCTGCAACAATGAGTATTACTCCAGCTTCTGCTGTGCCAGCTGCACCCGCTTCCAGCTGCACGCTCAGCCTGCCCAGCAGCAGGGATAA

Related Sequences

XP_004837305.1 Protein

Papln PREDICTED: papilin isoform X2 [Heterocephalus glaber]

Length: 1324 aa      View alignments
>XP_004837305.1
MRLFLLLPLLLASASGSSAPEARPQSDTWGPWGEWSPCSRTCGGGISFRERPCYSQRKDGVTSCVGPARSHRTCHTESCSNGARDFRAEQCAELDGALFHGRQYRWLPYYGAPNKCELNCIPEGENFYYKHQEAVLDGTPCEPSGRDVCVDGRCRVVGCDHELDSSKEEDKCLQCGGDGTACYSVTGTFDANDLSRGYNRIFIIPAGATSIHIEESAASRNFLAVRSVRGEYYLNGHWAISEPRALPVASTILHYERGADGDLAPERLQARGPTSEPLIIELISQEANPGVHYEYYLPLRGPGSSQGFSWSHTSWGDCSVECGGGHQSRLVFCTSDSEPYPYHMCQRQPRPADRRPCNSHPCPQTKRWKVGLWAPCSATCGGGFQSRSVYCVSSDGAGGQEAAEEAECAGLPGKPPSTQACNLQRCAAWSAGPWEECSVTCGAGIRRRSVTCLGDEGSLFPASACSLEDRPPLMETCVQAACPLSDQAWRVSAWGLCSKSCSSGIRRRQVICAIGPPNHCRNLQQSKPRDVELCNMQPCHLPQEVPSVQDSHAHPRGPWMPLGPREALASGEEQSGLPPRLLSFCEWHLEVEVKGGAVGRGLEDGRRWVGGGHGSWVDALAWFCFPFLDSRDQRPSVPNRPRGLGGSPPSAPGPTPPLQQPPRSGLGAQDCRQGPYGCCPDGRTASLGPQGQGCPRTEVWCQQSRYGCCPDGVSVAKGPQQAGCVRSYGSNDAGRRPGSEAVPSTASEAHRPQTQQNEPAACRGSQFGCCYDNMASAAGPLGEGCSGQPSSAYPVRCLLPSALGSCTDWAPRWYFIPSVGLCNRFWYGGCHGNANNFGSEQECMSSCRGTQHGLHHPDPGATGPGTHTDGRGSGPRGQQEISRHRPGDTDQRLLPSSGGPRQREQEPLPGEAQPTLAFGEWPKGQDIGARTPGLGRDPRWPVPPSPSSSYRINLAGSEPSMVQAALGQLIQLFCPTDASLESQAGWQKDGQPISSDRHQLQSDGSLVISPLRAEDAGIYTCGGNRPGHASRKIQLHVTGADIAVPSETEPRHFSGTRDPARGQGPRDSVLGGRAVVPSPQPRPATRLRLDGTQPGVVDASPGQRVRLSCRSEGFPPPVIEWQRDGQPVASPRHQMQPDGSLVISQVAVEDGGFYACVAFNGQDRDQRWVQLRVLGELTITGLPPSVTVSEGDTARLPCVVGDESVNIRWSRNGVPVQADGRRVHQSPDGTLLIHNLRARDEGSYTCSAYRGSQAVSRSTEVKVAAPAATAPSREAGRDCIDQPELANCDLILQAQLCNNEYYSSFCCASCTRFQLHAQPAQQQG