Details from NCBI annotation

Gene Symbol Vipas39
Gene Name VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, transcript variant X2
Entrez Gene ID 101703880

Database interlinks

Part of NW_004624734.1 (Scaffold)

For more information consult the page for NW_004624734.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VIPAS39 ENSCPOG00000006537 (Guinea pig)

Gene Details

VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005887, Guinea pig)

Protein Percentage 96.35%
CDS Percentage 93.98%
Ka/Ks Ratio 0.09424 (Ka = 0.0189, Ks = 0.201)

VIPAS39 ENSG00000151445 (Human)

Gene Details

VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog

External Links

Gene Match (Ensembl Protein ID: ENSP00000452181, Human)

Protein Percentage 95.33%
CDS Percentage 91.48%
Ka/Ks Ratio 0.07869 (Ka = 0.0236, Ks = 0.3002)

Vipas39 ENSMUSG00000021038 (Mouse)

Gene Details

VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000072527, Mouse)

Protein Percentage 93.69%
CDS Percentage 88.12%
Ka/Ks Ratio 0.06899 (Ka = 0.0333, Ks = 0.4821)

Vipas39 ENSRNOG00000049223 (Rat)

Gene Details

VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog (Vipas39), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066883, Rat)

Protein Percentage 92.83%
CDS Percentage 88.33%
Ka/Ks Ratio 0.0854 (Ka = 0.0385, Ks = 0.4512)

Genome Location

Sequence Coding sequence

Length: 1482 bp    Location: 24435468..24464883   Strand: +
>XM_004837125.1
ATGAATTGGACAAAGGGTGATGAAGAAGAATATTGGAACAGCTCCATGTTCAAGGCTTTTACCTTTGATGATGAAGATGATGAGCTCTCACAGTTAAAGGAATCCAAGCGGGCCGTGAATAGCCTTCGAGACTTTGTGGATGATGATGATGATGATGAATTGGAGCGAGTCAGCTGGAGTGGAGAACCTGTAGGAAGTATCTCGTGGTCCATCAAAGAGACTGCTGGTCATAGTGGGTCAACCCATGAAGGACGCGAACAGCTAAAGAACCGAAATAGTTTCTCCTCCTATGCACAACTACCCAAACCTACTTCTACCTACTCCCTAAGCAGCTTCTTTAGAGGTAGAACTAGACCTGGAAGTTTCCAGTCTCTTTCTGATGTTCTGTCGGACACACCTGCCAAAAGCTATGCTCCAGAGCTGGGGAGGCCCAAGGGGGAATATAGAGATTATAGCAATGACTGGAGCCCCAGTGATACAGTGCGACGCCTTCGAAAGGGCAAGGTCTGCTCACTGGAAAGATTCCGCTCCTTACAGGACAAGCTACAACTCCTAGAAGAGGCAGTAAGCATGCATGATGGAAATGTCATTACTGCAGTTCTGATCTTCCTGAAGAGGACATTGAGCAAAGAGATCCTCTTCCGAGAGCTGGAAGAGCGACAGGTTGCCCTCAGACATCTCATTTACTTCCTTAAGGAAATAGGGGATCAGAAACTTCTTATAGACCTCTTCAGGTTCCTAGATAGAACAGAAGAGCTTGTGCTGTCCCATTATCGAGAACATTTGAATATTCAGGACCCTGAGAAACGAAAAGAATTTCTTAAGACCTGCATTAGTTTGCCGTTTTCAGCAGAAGATTCTGCACATATACAAGACCATTACACTCTCCTGGAACGGCAGATCATTATTGAGGCTAATGATCGACATCTAGAGGCAGCAGGACAGACTGAGATCTTCCGAAAGCATCCCCGCAAAGCTTCCATCCTCAACATGCCACTAGTGACAACACTGTTTTACTCCTGCTTCTATCACTATGGGGAGGCTGAGGGGACATTCAGCAGTCCCATCAATCTGAAGAAGACATTTAAGATCCCAGACAAACAGTATGTGCTGACAGCCCTGGCTGCTCGTGCCAAGCTTCGAGCCTGGCATGATGTTGATGCCCTCTTTACTACAAAGAACTGGTTGGGTTATACTAAGAAGAGAGCACCCATTGGCTTCCATCGAGTTGTGGAAATTTTACACAAAAACAGTGCCCCTGTCCAGATTTTACAAGAGTATGTCAGTCTAGTGGAAGATGTGGACACAAAGTTGAACTTAGCGACTAAGTTCAAGTGCCATGATGTCGTCATTGATACCTGCCGAGATCTGAAGGATCGTCAGCAGTTGCTTGGATATAGGAGCAAGGTAGACAAAGGATCTGCAGAGGAAGAGAAAATTGATGCCATTCTCAGCAGCTCGCAAATTCGATGGAAGAATTGA

Related Sequences

XP_004837182.1 Protein

Vipas39 PREDICTED: spermatogenesis-defective protein 39 homolog isoform X2 [Heterocephalus glaber]

Length: 493 aa      View alignments
>XP_004837182.1
MNWTKGDEEEYWNSSMFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDELERVSWSGEPVGSISWSIKETAGHSGSTHEGREQLKNRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSLSDVLSDTPAKSYAPELGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEERQVALRHLIYFLKEIGDQKLLIDLFRFLDRTEELVLSHYREHLNIQDPEKRKEFLKTCISLPFSAEDSAHIQDHYTLLERQIIIEANDRHLEAAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYGEAEGTFSSPINLKKTFKIPDKQYVLTALAARAKLRAWHDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNSAPVQILQEYVSLVEDVDTKLNLATKFKCHDVVIDTCRDLKDRQQLLGYRSKVDKGSAEEEKIDAILSSSQIRWKN