Details from NCBI annotation

Gene Symbol Sptlc2
Gene Name serine palmitoyltransferase, long chain base subunit 2
Entrez Gene ID 101702355

Database interlinks

Part of NW_004624734.1 (Scaffold)

For more information consult the page for NW_004624734.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SPTLC2 ENSCPOG00000001497 (Guinea pig)

Gene Details

serine palmitoyltransferase, long chain base subunit 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001353, Guinea pig)

Protein Percentage 96.07%
CDS Percentage 94.23%
Ka/Ks Ratio 0.11542 (Ka = 0.021, Ks = 0.1816)

SPTLC2 ENSG00000100596 (Human)

Gene Details

serine palmitoyltransferase, long chain base subunit 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000216484, Human)

Protein Percentage 96.79%
CDS Percentage 92.32%
Ka/Ks Ratio 0.05737 (Ka = 0.0168, Ks = 0.2927)

Sptlc2 ENSMUSG00000021036 (Mouse)

Gene Details

serine palmitoyltransferase, long chain base subunit 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021424, Mouse)

Protein Percentage 95.71%
CDS Percentage 90.0%
Ka/Ks Ratio 0.05752 (Ka = 0.0236, Ks = 0.41)

Sptlc2 ENSRNOG00000012210 (Rat)

Gene Details

serine palmitoyltransferase, long chain base subunit 2 (Sptlc2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016324, Rat)

Protein Percentage 94.64%
CDS Percentage 89.29%
Ka/Ks Ratio 0.06798 (Ka = 0.0295, Ks = 0.4339)

Genome Location

Sequence Coding sequence

Length: 1683 bp    Location: 24281490..24396801   Strand: +
>XM_004837119.1
ATGCGGCCCGGGCCTGCAGGCTGCTCCTGCCGCCGCCCCATGCGGGCGAACGGCTTCGTGGCGAACGGGGAATTGCGGAACGGGTACGTGAGGAGCGGCGCAGCTCTCACCGCCGCCGCCGGCCAGATCCATCATGTTACAGAAAATGGAGGACTTTATAAAAGACCATTTAATGAAGCTTTTGAAGAAACACCCATGCTGGTTGCTGTGCTCACATATGTAGGGTATGGTGTCCTCACCCTCTTTGGATATCTTCGAGATTTCTTGAGGCACTGGAGAATTGAAAAATGTCACCATGCAACAGAAAGAGAAGAACAAAAGGACTTTGTGTCATTGTATCAGGATTTTGAAAACTTCTATACAAGGAACCTCTACATGAGGATAAGAGACAACTGGAATCGACCGATCTGTAGTGTGCCTGGAGCCAAAGTGGACATCATGGAGAGACAGTCTCATGATTATAACTGGTCATTCAAGTATACAGGGAATATAATTAAAGGAGTTATAAACATGGGTTCCTACAACTATCTTGGATTTGCACGGAACACTGGCTCATGTCAAGAGGCAGCTGCCAAAGTCCTAGAGGAGTATGGAGCCGGAGTATGCAGCACTCGGCAGGAAATTGGAAACCTGGACAAGCATGAAGAACTAGAGAAGCTTGTAGCAAGGTTCTTGGGAGTAGAAGCTGCTATGGCATATGGCATGGGATTTGCAACAAATTCAATGAACATTCCTGCTCTTGTTGGCAAAGGTTGCCTTATTCTAAGTGATGAACTGAACCATGCATCACTGGTTCTAGGAGCCAGACTGTCAGGAGCAACTATTCGAATCTTCAAACACAACAATATGCAAAGTTTAGAGAAACTGTTGAAAGATGCCATTGTCTATGGTCAGCCTCGGACACGAAGGGTCTGGAAGAAAATTCTAATCCTCGTGGAAGGTATATATAGTATGGAGGGGTCTATTGTTCGCCTTCCTGAAGTGATTGCCCTTAAGAAGAAATACAAGGCTTACCTGTATCTTGATGAGGCTCACAGCATCGGGGCCCTGGGCCCTACAGGCCGAGGTGTAGTGGAGTACTTTGGGCTGGATCCTGAGGATGTAGACGTTATGATGGGAACGTTCACAAAGAGCTTCGGTGCTGCTGGAGGATACATTGGAGGCAAGAAGGAGCTGATAGACTATCTGCGCACACACTCCCACAGTGCAGTGTATGCCACGTCCCTGTCGCCACCTGTGGTGGAGCAGGTCATCACCTCTATGAAGTGCATCATGGGGCAGGATGGCACCAGCCTTGGCAAAGAGTGTGTGCAGCAGTTAGCTGAAAATACCAAGTATTTCAGGAGACGCCTGAAGGAGATGGGCTTCATTATTTATGGAAATGAAGATTCTCCAGTGGTGCCTTTGATGCTCTACATGCCAGCCAAAATTGGCGCCTTTGGGCGGGAGATGCTGAAGCGGAACATTGGTGTAGTTGTGGTTGGATTTCCTGCCACCCCAATTATTGAGTCTAGAGCCAGGTTTTGCTTGTCGGCAGCTCATACCAAAGAAATACTTGATACGGCTTTAAAGGAGATAGATGAAGTTGGGGACCTATTGCAGCTGAAGTATTCCCGTCATCGATTGGTGCCTCTACTGGACAGACCGTTCGACGAGACAACTTATGAAGAAACGGAAGACTGA

Related Sequences

XP_004837176.1 Protein

Sptlc2 PREDICTED: serine palmitoyltransferase 2 [Heterocephalus glaber]

Length: 560 aa      View alignments
>XP_004837176.1
MRPGPAGCSCRRPMRANGFVANGELRNGYVRSGAALTAAAGQIHHVTENGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRHWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGAKVDIMERQSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEKLVARFLGVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRVWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGAAGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQVITSMKCIMGQDGTSLGKECVQQLAENTKYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED