Sequence details NCBI ID: XM_004836598.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Shroom1
Gene Name shroom family member 1, transcript variant X5
Entrez Gene ID 101713740

Database interlinks

Part of NW_004624733.1 (Scaffold)

For more information consult the page for NW_004624733.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SHROOM1 ENSCPOG00000020425 (Guinea pig)

Gene Details

shroom family member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018978, Guinea pig)

Protein Percentage 72.38%
CDS Percentage 80.36%
Ka/Ks Ratio 0.45693 (Ka = 0.1851, Ks = 0.4051)

SHROOM1 ENSG00000164403 (Human)

Gene Details

shroom family member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000367950, Human)

Protein Percentage 72.46%
CDS Percentage 80.46%
Ka/Ks Ratio 0.36037 (Ka = 0.1698, Ks = 0.4711)

Shroom1 ENSMUSG00000018387 (Mouse)

Gene Details

shroom family member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000104641, Mouse)

Protein Percentage 59.18%
CDS Percentage 70.33%
Ka/Ks Ratio 0.46323 (Ka = 0.3258, Ks = 0.7033)

Shroom1 ENSRNOG00000007431 (Rat)

Gene Details

Protein Shroom1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066767, Rat)

Protein Percentage 61.4%
CDS Percentage 71.05%
Ka/Ks Ratio 0.45154 (Ka = 0.3102, Ks = 0.687)

Genome Location

Sequence Coding sequence

Length: 2466 bp    Location: 39272535..39279919   Strand: +
Raw sequence   
>XM_004836598.1
ATGGAGGCCCTGGGTCCTGGGGGCGAGCGCGCCTCCCCTGCCGCCTGCCCTGGAAGCCCAGACTTGGGGCCGCCGTCCACGCGCGCCGACTCGGCCTACAGCTCCTTCTCAGGCGGCCCTGAGCCGCGCGCCCCATCGCCTGCGGCCGTCCTGCCTCACCTGGACGGGGACTACGTGCGCGCGGTGTGGGGCGGCCCGGGGCCCGCTCCGCCCGACGCCACCCAGAGCGCAGCCCAGCGGCCCGGGCCAGCGGTCGCCGCGCACAGTGGGCTCCAGGGGGCCCCGGGGCGGCTCAGCAGACAGGCCACCCCGCTGCTCTACGCGCTGGCCGCCGAGGCCGAAGCCGGGGTGCGGGCTGCCGAGCCCCCAAGCCCGCCGGCCTCGCGGGCCGCCTACCGCCAGCGGCTGCGGGGCGCGCAGCGCAGGGTGCTCCGGGAGACGTCCTTCCAGCGCAGGGAGCTCCGCGTGAGCCTGCCCGCCCGCCTGCGGCCCGCGGCCCCGGCGCACCTGCCCCCGGCGCACCCGCGCTCCTCCTCGCTCAGCCACCCGGGCGGGGACTGCCGGGCCCCCGCGCCGGGAACCGCGGGCCAGGGCCGCCTCGCCAGCCAGCAGCGGAAGTGGTGCTTCTCGGAGCCGGGGAAGCTGGATCGCGTGGGTCGGGGCTGTGGGCCGGCCGGGGAAGGCTTGAGCGAGACCTGCTTCAGCCCGGGCCTCGCCGGGCCTGAGCCCCAAGAACTGCCGCGGGCGGCGGGGGCTGCGTTCCAAGGGCTGCCGAGAACCCAACACCAGAGCACAGCAGAGCTGGACTCTGGGTCCGCGAAGCTCGGCGGTGCCAGTGCCCCGCGGCCTGGCAGTCGGCGGCAGAGCGCTTCGGGCGAGGTGCTGGGTCCCTGCACAGGCCCAGGAGGGGTCGTGGCCCTTGTGCAGGCTGTTCCTCCAGGTCCGGAAAGCCCCAGACCACTGTTTCAAACCACGTTTTCCAGGTTCTTGCCTCAGAAGGAGGCTGTCCTGGTGTGTCCGGCAGCGGGCCCTCGGAGCAGCCTGGCCGACTGTGAAGAGAGGCTTGCAGAGACCTGCACAGAGCCTGCCCGGCTGCCCTCCCTTCCTGATGATGAAGTGTTCCTAGAAGAAGCCCCTCTGAATAGGCTGAGATTGCCCCAGGGAGCCCCAGCCAGTGTCCATGCCTCTGACCAGAATTCTGGAACTGGCTTGGGCCAGGCTACAGACCCCCCCAAATATCCCTTCCATGAGTGTCCAAGGACTGCAGGGGCAGAGGATTACTGGCAAGGGATGAATGGCTCTGTGGCTGTCTCCAGGCCCACAAGCTGTAGCTCCCCTGGGACTCCAAACGGGGACATCCCACCCACTGACTCCACTGCACTGCTGACCCCCGACACCCCTCCAGCGGCAGAAAGTGACCCTCTCAAGCCTCCCCTAGTTGATGTCCTGGGTCCTTCGGGCAGTGCTACTGCAGGACCCCAGAACCACACTTCCCTGGGCTGGGGCACTGGCCAGTTGGGTTCCCGACCAACATGGCCCAGCCAGCGTCTTGAGGAGCTGGTTCAGGAGCTAGCCAGACTGGACCCCTCCCTGAGTGACACTCTTGCCTCTGAGCCCAGCCCAGAGCCGCCCCCGGGCCTGCTGGATGGACTGATTCCTCTAACAGAGGCCCAGGCCACAGTGTGGCCAGCCTTTAGGGAGCCAGGAGAGGAGGTCGCAAGTACTTCTGAGCCAGGGTCCTGTCTGTTCAGCTTTACCCAGCTGCTACCAGCTTCTCAGGAGACAAGGCCAGAAAACGCTACCCTCCTACCTGTGCCCAACCAGCCATGTGGCCAGGGGCTCCCAGCACAAAACGTCAGCATCCAGGTCAAGAAAGTGGAGCTAGCAGGCCTCCTCCAAAAGATGCTGCAGGACCTCCACGCCAGGCAGGAGCAGCTGCAGGGCGTGGCTCAAGCGTGGGCCAGGCGCAGGGCAGCTCTGGAGGCAGCGGTGGCTCAGGCCTGTGCACCCAGGGAGCTGGAGCGGTTCAGCCGGTTCATGGCCGACCTAGAACGCGTGCTTGGCCTCCTGCTACTGCTAGGCAGTCGGCTGGCCCGCGTGCACCGCGCCTTGGCCCGGGTGGGCTCAGACGGCGACCCTGAGGAGCGGGCCTCTCTGCTGCAGCGACTCGGCCTTCTTCGGCGACAGCAGGAGGATGCCAGGGAGTTGAAGGAGCACGTGTCGCGGCGCGAGCGGGCCCTGCGCGAGGTGCTGGCGCGAGCTCTGCCGGCGGAGGAGGTGCGCGCCTACTGCACGCTGCTGGCTGACAAGGCCGCGGTCCTGGCCCAGCAGCGCAGCCTGGACGAGCGAGTCCGGCTCCTGCAGGACCAACTGGACGCTGTCAGGAGTGACCTTTCTCCCAGGCCATCCCGGCCCCCGAGGACCTGTCCTCCGGATAAACAGCCATTCCCTCCTCCCCCTGTTTAG

Related Sequences

XP_004836655.1 Protein

Shroom1 PREDICTED: protein Shroom1 isoform X5 [Heterocephalus glaber]

Length: 821 aa      View alignments
>XP_004836655.1
MEALGPGGERASPAACPGSPDLGPPSTRADSAYSSFSGGPEPRAPSPAAVLPHLDGDYVRAVWGGPGPAPPDATQSAAQRPGPAVAAHSGLQGAPGRLSRQATPLLYALAAEAEAGVRAAEPPSPPASRAAYRQRLRGAQRRVLRETSFQRRELRVSLPARLRPAAPAHLPPAHPRSSSLSHPGGDCRAPAPGTAGQGRLASQQRKWCFSEPGKLDRVGRGCGPAGEGLSETCFSPGLAGPEPQELPRAAGAAFQGLPRTQHQSTAELDSGSAKLGGASAPRPGSRRQSASGEVLGPCTGPGGVVALVQAVPPGPESPRPLFQTTFSRFLPQKEAVLVCPAAGPRSSLADCEERLAETCTEPARLPSLPDDEVFLEEAPLNRLRLPQGAPASVHASDQNSGTGLGQATDPPKYPFHECPRTAGAEDYWQGMNGSVAVSRPTSCSSPGTPNGDIPPTDSTALLTPDTPPAAESDPLKPPLVDVLGPSGSATAGPQNHTSLGWGTGQLGSRPTWPSQRLEELVQELARLDPSLSDTLASEPSPEPPPGLLDGLIPLTEAQATVWPAFREPGEEVASTSEPGSCLFSFTQLLPASQETRPENATLLPVPNQPCGQGLPAQNVSIQVKKVELAGLLQKMLQDLHARQEQLQGVAQAWARRRAALEAAVAQACAPRELERFSRFMADLERVLGLLLLLGSRLARVHRALARVGSDGDPEERASLLQRLGLLRRQQEDARELKEHVSRRERALREVLARALPAEEVRAYCTLLADKAAVLAQQRSLDERVRLLQDQLDAVRSDLSPRPSRPPRTCPPDKQPFPPPPV