Sequence details NCBI ID: XM_004836374.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ergic1
Gene Name endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1, transcript variant X1
Entrez Gene ID 101697164

Database interlinks

Part of NW_004624733.1 (Scaffold)

For more information consult the page for NW_004624733.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ERGIC1 ENSCPOG00000012183 (Guinea pig)

Gene Details

endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010956, Guinea pig)

Protein Percentage 99.31%
CDS Percentage 95.06%
Ka/Ks Ratio 0.01039 (Ka = 0.003, Ks = 0.2877)

ERGIC1 ENSG00000113719 (Human)

Gene Details

endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000377374, Human)

Protein Percentage 99.31%
CDS Percentage 92.53%
Ka/Ks Ratio 0.00521 (Ka = 0.0029, Ks = 0.5618)

Ergic1 ENSMUSG00000001576 (Mouse)

Gene Details

endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000132922, Mouse)

Protein Percentage 98.97%
CDS Percentage 89.43%
Ka/Ks Ratio 0.00712 (Ka = 0.0061, Ks = 0.8505)

Ergic1 ENSRNOG00000003508 (Rat)

Gene Details

Protein Ergic1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005273, Rat)

Protein Percentage 97.58%
CDS Percentage 89.39%
Ka/Ks Ratio 0.0151 (Ka = 0.0121, Ks = 0.8002)

Genome Location

Sequence Coding sequence

Length: 873 bp    Location: 17196584..17092844   Strand: -
Raw sequence   
>XM_004836374.1
ATGCCCTTTGATTTCAGGAGGTTTGATATCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACGTACACTGGGGCCATTATCTCCATCTGCTGCTGCCTCTTCATCCTCTTCCTCTTCCTTTCAGAACTCACCGGATTCATCACAACAGAAGTTGTGAACGAGCTCTACGTTGATGACCCGGATAAGGACAGCGGGGGCAAAATTGATGTCAGTCTGAACATCAGTTTACCCAATTTGCACTGCGAATTGGTCGGGCTCGATATCCAGGATGAGATGGGCAGGCACGAGGTGGGCCACATCGACAACTCCATGAAGATCCCGCTGAACAATGGTGCAGGCTGCCGCTTTGAGGGCCAATTCAGCATCAATAAGGTCCCTGGCAATTTCCATGTCTCCACACATAGTGCCACAGCCCAACCACAGAACCCGGACATGACACACGTCATCCACAAGCTCTCCTTCGGGGACACACTACAGGTCCAGAATGTCCACGGAGCTTTCAACGCTCTCGGGGGAGCAGACAGACTCACCTCCAACCCCCTCGCCTCCCACGACTACATCCTGAAGATCGTGCCCACGGTTTACGAGGACAAGAGTGGCAAGCAGTGGTACTCCTACCAGTACACTGTGGCCAACAAGGAGTATGTCGCCTATAGTCACACAGGCCGCATCATCCCTGCCATCTGGTTCCGCTACGACCTCAGCCCCATCACAGTGAAGTACACCGAGAGAAGGCAGCCGCTGTACAGGTTCATCACCACGATCTGTGCCATCATTGGTGGGACCTTCACCGTCGCTGGCATTCTGGACTCCTGCATCTTCACAGCCTCTGAGGCCTGGAAAAAGATCCAGCTAGGCAAGATGCATTGA

Related Sequences

XP_004836431.1 Protein

Ergic1 PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X1 [Heterocephalus glaber]

Length: 290 aa      View alignments
>XP_004836431.1
MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQWYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH