Sequence details NCBI ID: XM_004836163.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema6a
Gene Name sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A, transcript variant X1
Entrez Gene ID 101717792

Database interlinks

Part of NW_004624733.1 (Scaffold)

For more information consult the page for NW_004624733.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA6A ENSCPOG00000007703 (Guinea pig)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006942, Guinea pig)

Protein Percentage 96.4%
CDS Percentage 92.65%
Ka/Ks Ratio 0.0651 (Ka = 0.0185, Ks = 0.2838)

SEMA6A ENSG00000092421 (Human)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

External Links

Gene Match (Ensembl Protein ID: ENSP00000345512, Human)

Protein Percentage 96.02%
CDS Percentage 91.48%
Ka/Ks Ratio 0.05812 (Ka = 0.0205, Ks = 0.353)

Sema6a ENSMUSG00000019647 (Mouse)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000019791, Mouse)

Protein Percentage 94.85%
CDS Percentage 89.41%
Ka/Ks Ratio 0.05964 (Ka = 0.0272, Ks = 0.4563)

Sema6a ENSRNOG00000004033 (Rat)

Gene Details

Protein Sema6a

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005476, Rat)

Protein Percentage 93.88%
CDS Percentage 88.92%
Ka/Ks Ratio 0.07597 (Ka = 0.0344, Ks = 0.4527)

Genome Location

Sequence Coding sequence

Length: 3141 bp    Location: 5249513..5373956   Strand: +
Raw sequence   
>XM_004836163.1
ATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTGCATTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCAATCAGTATTTCGCATGGCAACTATACAAAACAGTATCCAGTTTTTGTGGGCCACAAGCCAGGACGGAACACCACACAGAGGCACAGGCTGGATATCCAGATGATTATGATCATGAACAGAACCCTCTACATTGCTGCTAGGGATCATATTTATACAGTTGATATAGATACATCCCACACAGAAGAAATTTACTGTAGCAAAAAACTGACATGGAAATCTAGACAGGCTGATGTAGACACATGCAGAATGAAGGGAAAACATAAGGATGAGTGTCACAACTTTATTAAAGTCCTCCTAAAGAAAAATGATGATACCTTGTTTGTCTGTGGAACAAACGCTTTCAACCCTTCCTGCAGGAACTACAAGATCGATACTTTGGAATCTTTTGGGGATGAATTTAGTGGAATGGCCAGATGCCCTTATGATGCCAAACATGCCAACATTGCACTGTTTGCAGATGGAAAGTTATACTCGGCCACAGTGACTGACTTCCTTGCCATCGATGCTGTCATTTACCGGAGTCTTGGAGACAGCCCTACCCTGAGGACCGTCAAGCATGATTCAAAATGGCTGAAAGAACCATACTTTGTCCAAGCAGTGGATTATGGAGATTATATCTACTTCTTCTTCCGGGAAATTGCAGTGGAGTACAACACCATGGGAAAGGTCATTTTCCCTCGAGTGGCTCAAGTTTGTAAGAATGACATGGGAGGCTCTCAGCGAGTCCTGGAGAAACAGTGGACATCTTTCCTCAAGGCCCGCCTGAACTGCTCAGTTCCCGGAGACTCTCACTTTTATTTCAACATACTCCAGGCCGTTACAGACGTGATTCGTATTAACGGCCGTGATGTTGTCCTGGCAACCTTTTCCACACCTTACAACAGCATCCCAGGGTCCGCAGTCTGTGCCTATGACATGCTTGACATTGCCAGTGTTTTTACTGGGAGATTCAAGGAACAGAAGTCTCCCGATTCTACTTGGACACCAGTTCCTGATGAACGAGTCCCTAAGCCCAGACCAGGTTGCTGTGCTGGCTCATCCTCCTTAGAAAAATATGTGACCTCCAATGAGTTTCCCGATGATACCCTGAACTTCATTAAGACACATCCGCTCATGGATGAAGCGGTGCCTGCCATTATCAACAGACCGTGGTTCCTGAGAACAATGGTCAGATACCGCCTGACCAAAATTGCAGTGGACACTGCTGCTGGGCCGTATCAGAATCACACTGTGGTTTTCCTGGGATCAGAAAAGGGAATCATCTTGAAGTTCTTGGCCAGGATAGGAAACAGTGGGTTCCTAAATGACAGCCTCTTCCTGGAGGAGATGAATGTTTACAACCCAGAAAAGTGCAGCTATGATGGAGTAGAAGACAAGAGGATTATGAGCATGCAGCTGGACAGAGCAAGCAGCTCTCTGTATGTCGCATTCTCTACCTGTGTGATAAAGGTTCCACTTGGCCGGTGTGAACGACATGGGAAATGTAAAAAAACCTGCATTGCCTCCAGAGACCCGTACTGCGGGTGGCTAAAGGAAGGAGGCACCTGTGCCCATCTGTCACACAGCAGCAGACTGACTTTTGAGCAGGACATAGAGCGTGGCAACACAGACGGCCTGGGAGACTGTCACAATTCCTTCGTGGCACTGAATGACATTTCAACTCCACTACCAGATCATGAAATGTCTTACAACACAGTGTATGGGCACGCCAGTTCCCTCTTGCCCAGCACCACCACGTCAGATTCGGCGGCTCAGGAGGGGTATGAGTCTAGGGGAGAAATGCTGGACTGGAAGGATCTGCTCGATTCACCTGGCAACACAGACCCTTTGGGGGCAGTGTCTTCCCATAATCACCAAGACAAGAAGGGAGTGATTCGGGAAAGTTACCTCAAAGGACAAGACCAGCTCGTTCCTGTCACTCTCTTGGCCATCGCAGTGATTCTGGCTTTTGTTATGGGGGCCGTTTTCTCTGGCATCACCGTGTACTGCGTCTGTGATCACCGGCGCAAGGACGTGGCGGTCGTGCAGCGCAAGGAAAAGGACCTCACCCACTCGCGCCGGGGGTCCATGAGCAGCGTCACCAAGCTCAGTGGCCTCTTCGGGGACACTCAGTCCAAAGACCCAAAGCCAGAGGCCATCCTTACGCCACTCATGCACAACGGCAAGCTCGCCACCCCCAGCAATACCGCCAAGATGCTCATTAAGGCTGACCAGCACCACATGGACCTGACGGCCTTGCCCACCCCCGAGTCCACCCCGACCCTGCAGCAGAAGCGGAAGCCCAGCCGCGGCAGCCGCGAGTGGGAAAGGAATCAAAACCTCATCAATGCCTGCACAAAAGACATGCCCCCCATGGGCTCTCCCGTGATCCCCACGGACCTGCCCCTCCGGGCCTCCCCGAGCCACATCCCCAGTGTGGTGGTCTTGCCCATCACACAGCAGGGCTACCAACACGAGTACGTGGACCAGCCCAAAATGAGCGAGGTGGCCCAAATGGCACTGGAAGACCAGGCTGCCACCTTGGAGTATAAGACCATCAAGGAGCATCTCAGCAGCCAAAGTCCCAATCACGGGGTGAACCTTGCGGAGAACCTGGACAGCCTGCCCCCCAAGGTTCCCCAGCGGGAGGCCTCGCTGGGCCCGCCGGGAGCCTCCCTGTCTCAGCATGGCCTGAGCAAGCGTCTGGAAGCAGCGCACCACTCCTACGGGCTTGACTACAAGAGGAGCTACCCCACGAACTCGCTGTCGAGGGGCCACCAGGCCACCTCTCTGAAAAGAAACAATACTAACTCCTCCAACTCCTCCCACCTCTCTAGAAACCAGAGCTTTGGCCGGGGGGACAACCCGCCCCCCGCCCCGCAGAGGGTGGACTCCATCCAGGTGCACAGCGCCCAGCCCTCCGGCCAGGCTGTGACAGTGTCGAGGCAGCCCAGCCTCAACGCCTACAACTCACTGACCAGGTCGGGGCTGAAGCGCACACCCTCGCTAAAGCCGGACGTACCCCCCAAACCCTCCTTTGCTCCCCTTTCCACATCCATGAAGCCCAATGACGCGTGTACATAA

Related Sequences

XP_004836220.1 Protein

Sema6a PREDICTED: semaphorin-6A isoform X1 [Heterocephalus glaber]

Length: 1046 aa      View alignments
>XP_004836220.1
MRSEALLLYFTLLHFAGAGFPEDSEPISISHGNYTKQYPVFVGHKPGRNTTQRHRLDIQMIMIMNRTLYIAARDHIYTVDIDTSHTEEIYCSKKLTWKSRQADVDTCRMKGKHKDECHNFIKVLLKKNDDTLFVCGTNAFNPSCRNYKIDTLESFGDEFSGMARCPYDAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVIFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIASVFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYVTSNEFPDDTLNFIKTHPLMDEAVPAIINRPWFLRTMVRYRLTKIAVDTAAGPYQNHTVVFLGSEKGIILKFLARIGNSGFLNDSLFLEEMNVYNPEKCSYDGVEDKRIMSMQLDRASSSLYVAFSTCVIKVPLGRCERHGKCKKTCIASRDPYCGWLKEGGTCAHLSHSSRLTFEQDIERGNTDGLGDCHNSFVALNDISTPLPDHEMSYNTVYGHASSLLPSTTTSDSAAQEGYESRGEMLDWKDLLDSPGNTDPLGAVSSHNHQDKKGVIRESYLKGQDQLVPVTLLAIAVILAFVMGAVFSGITVYCVCDHRRKDVAVVQRKEKDLTHSRRGSMSSVTKLSGLFGDTQSKDPKPEAILTPLMHNGKLATPSNTAKMLIKADQHHMDLTALPTPESTPTLQQKRKPSRGSREWERNQNLINACTKDMPPMGSPVIPTDLPLRASPSHIPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATLEYKTIKEHLSSQSPNHGVNLAENLDSLPPKVPQREASLGPPGASLSQHGLSKRLEAAHHSYGLDYKRSYPTNSLSRGHQATSLKRNNTNSSNSSHLSRNQSFGRGDNPPPAPQRVDSIQVHSAQPSGQAVTVSRQPSLNAYNSLTRSGLKRTPSLKPDVPPKPSFAPLSTSMKPNDACT