Sequence details NCBI ID: XM_004835986.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ptpn18
Gene Name protein tyrosine phosphatase, non-receptor type 18 (brain-derived), transcript variant X1
Entrez Gene ID 101706897

Database interlinks

Part of NW_004624732.1 (Scaffold)

For more information consult the page for NW_004624732.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTPN18 ENSCPOG00000001931 (Guinea pig)

Gene Details

protein tyrosine phosphatase, non-receptor type 18 (brain-derived)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001741, Guinea pig)

Protein Percentage 82.3%
CDS Percentage 84.14%
Ka/Ks Ratio 0.2267 (Ka = 0.1059, Ks = 0.4672)

PTPN18 ENSG00000072135 (Human)

Gene Details

protein tyrosine phosphatase, non-receptor type 18 (brain-derived)

External Links

Gene Match (Ensembl Protein ID: ENSP00000175756, Human)

Protein Percentage 78.76%
CDS Percentage 83.11%
Ka/Ks Ratio 0.22845 (Ka = 0.1195, Ks = 0.5231)

Ptpn18 ENSMUSG00000026126 (Mouse)

Gene Details

protein tyrosine phosphatase, non-receptor type 18

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000027302, Mouse)

Protein Percentage 74.34%
CDS Percentage 78.83%
Ka/Ks Ratio 0.24455 (Ka = 0.161, Ks = 0.6582)

Ptpn18 ENSRNOG00000013415 (Rat)

Gene Details

protein tyrosine phosphatase, non-receptor type 18 (Ptpn18), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000061226, Rat)

Protein Percentage 74.44%
CDS Percentage 77.85%
Ka/Ks Ratio 0.21371 (Ka = 0.1602, Ks = 0.7496)

Genome Location

Sequence Coding sequence

Length: 1434 bp    Location: 14495752..14525388   Strand: +
Raw sequence   
>XM_004835986.1
ATGAGCTGCAGCCTGGACGCAGTGCGGAGCTTCCTGGAGCGGCTGGAGGCGCGCGGCGGCCGGGAGGGGGCAGCCCTCGCCCGCGAGTTCAGCGACATCAGGGCCCGCTCAGCGGCCTGGAAGACAGATGAAAAGTGCTCCACAGAGGCAGGCAATCTACCTAGAAACGTGAGGAAGAACCGCTACAAAGATGTGGTGCCATATGACCACACACGATCAATCCTCTCCCTGCTCCAGGAGGAGGGACATGGCGACTACATCAATGGCAGTTTCATTCGGGGTGCAGATGGAAGCCAGGCCTACATCGCCACACAAGGACCCCTGCCTCACACCTTGCTGGACTTCTGGCGCCTGGTCTGGGAGTTTGGGGTCAAGGTGATCCTGATGGCATGCCGAGAGACAGAGAATGACCGGAAAAAATGTGAACGTTACTGGCCCCAGGAACATGAACCACTACAGATCGGGCCTTTTTGCATCACTCTGACAAAGGAGACACCACTGAATGCAGACATCATCCTCAGGACCCTCAAAGTCACCTTCCAGAAGGAATCCCGTTCTGCACACCACCTGCAGTACATGTCCTGGCCAGACCGTGGGGTCCCTGGCAATCCTGACACCGTACTCACCATGATAGAGGAAGCCCGACGCCTCCAAGGATCTAGCTCCAGACCCCTCTGTGTCCATTGCAGTGCTGGCTGCGGGCGAACAGGTGTCCTGTGCACAATTGATTATGTGAGGCAGTTGCTCCTGACCCAGAGGATCCCACCTGACTTCAGCCTTTTTGACGTGGTCCTTGAGATGCGGAAGCAGCGGCCTTCAGTTGTGCAGACAGAGGAACAGTACAGATTCCTGCACCACACAGTGGCTCAGATGTTCTACTCGGCACTCCAGAAAACCAGCCCCCAGTACCAGAACCTCAAGGAGAATTGTGCCCCACTCTACGATGATGCCCTCTCCCTCTGGACTTCTCCAGCCCTTCTTGCAATCCCCTGCCCACCAGGCAGGGTCCTCAGGAGCATCTCCATGCCGGCGACCCAGACCCTCGCCATGGCAGACACGTATGCTGTGGTACAGAAGAGTAGGGACCCCGCAGGGGCAGCACCAGGGTCTTGGGAGCGCAGCACAGTGGAGAAGCCACTCTACAGCCAGGTAACAGCGCGCGCCCAGCTACCCAGGGCGCATGCGGAGGATGCGCAGGGGGCGCCGCCTGCCCTCGGTCTTGCTGACCAAAGCCCTGCTGGACCTGATGCTTATGAGGATGTGACAGATGGAGCTCAGACTGGTGGGCTAGGCTTCAACCTGCGCATTGGAAGGCCGAAGGGACCCCGAGACCCCCCTGCAGAGTGGACCCGGCCTCTTCCTTTTCCTACCATGGGAACATCCCTCCAGGAAGCACTGAATAGAAGCCAATCAGAGGATCTCACTAGAACCTGA

Related Sequences

XP_004836043.1 Protein

Ptpn18 PREDICTED: tyrosine-protein phosphatase non-receptor type 18 isoform X1 [Heterocephalus glaber]

Length: 477 aa      View alignments
>XP_004836043.1
MSCSLDAVRSFLERLEARGGREGAALAREFSDIRARSAAWKTDEKCSTEAGNLPRNVRKNRYKDVVPYDHTRSILSLLQEEGHGDYINGSFIRGADGSQAYIATQGPLPHTLLDFWRLVWEFGVKVILMACRETENDRKKCERYWPQEHEPLQIGPFCITLTKETPLNADIILRTLKVTFQKESRSAHHLQYMSWPDRGVPGNPDTVLTMIEEARRLQGSSSRPLCVHCSAGCGRTGVLCTIDYVRQLLLTQRIPPDFSLFDVVLEMRKQRPSVVQTEEQYRFLHHTVAQMFYSALQKTSPQYQNLKENCAPLYDDALSLWTSPALLAIPCPPGRVLRSISMPATQTLAMADTYAVVQKSRDPAGAAPGSWERSTVEKPLYSQVTARAQLPRAHAEDAQGAPPALGLADQSPAGPDAYEDVTDGAQTGGLGFNLRIGRPKGPRDPPAEWTRPLPFPTMGTSLQEALNRSQSEDLTRT