Sequence details NCBI ID: XM_004835884.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Itgb6
Gene Name integrin, beta 6, transcript variant X1
Entrez Gene ID 101701540

Database interlinks

Part of NW_004624732.1 (Scaffold)

For more information consult the page for NW_004624732.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ITGB6 ENSCPOG00000012302 (Guinea pig)

Gene Details

integrin, beta 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011065, Guinea pig)

Protein Percentage 93.78%
CDS Percentage 93.49%
Ka/Ks Ratio 0.18221 (Ka = 0.0325, Ks = 0.1785)

ITGB6 ENSG00000115221 (Human)

Gene Details

integrin, beta 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000283249, Human)

Protein Percentage 91.12%
CDS Percentage 90.06%
Ka/Ks Ratio 0.1409 (Ka = 0.0451, Ks = 0.3197)

Itgb6 ENSMUSG00000026971 (Mouse)

Gene Details

integrin beta 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000054944, Mouse)

Protein Percentage 87.8%
CDS Percentage 85.22%
Ka/Ks Ratio 0.11479 (Ka = 0.0663, Ks = 0.5772)

Itgb6 ENSRNOG00000008346 (Rat)

Gene Details

integrin, beta 6 (Itgb6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011030, Rat)

Protein Percentage 87.67%
CDS Percentage 85.47%
Ka/Ks Ratio 0.11906 (Ka = 0.0664, Ks = 0.5581)

Genome Location

Sequence Coding sequence

Length: 2427 bp    Location: 5404228..5496992   Strand: +
Raw sequence   
>XM_004835884.1
ATGAAAACTTTTAAATTTACATCTCAAGTTTCTTTTCAAAGCAGTCGAGAGCTGAAACGAATGGGGATTGAGCTGCTTTGCTTCTTCTTTCTATTTCTAGGAAGGGATGATTGCGTACAAGGTGGCTGTGCCATGGGAGGTGCGGAGACCTGTGGTGACTGCTTGCTCACTGGACCGCAGTGTGCCTGGTGCTCCCAGGAGAATTTTACTCACCCATCTGGAGTTAGCGAAAGGTGTGATACCCCAGCAAACCTTTTAGCCAAAGGATGTCAATTAATCTTCATTGAAAACCCTGTCTCCCAAGTGGAAATACTCAAAAATAAGCCTCTCAGTGTAGGCAGACAGAAGAATAGTTCTGATATTGTTCAGATTGTGCCTCAAAGCTTGATTCTTAAATTAAGACCAGGCAGCGAACAGACGCTCCAAGTGCAAGTCCGCCAGACCGAGGACTACCCAGTGGATTTGTATTACCTCATGGACCTCTCCGCCTCCATGAATGATGATCTCAACACAATCAAAGAGCTGGGCTCTCTGCTTTCCAAGGAGATGTCTAAATTAACTAGCAACTTTAGACTTGGCTTTGGCTCTTTTGTGGAAAAGCCTATCTCCCCTTTTATGAAAACAACACCAGAGGAAATCGCCAACCCTTGCAGTAGTATTCCATACTCCTGCTTACCTACATTTGGATTCAAGCACATTCTGCCATTGACAAATGATGCTGAAAGATTCAATGAAATTGTGAAGAATCAGAAAATTTCTGCTAATATTGACACACCTGAAGGTGGATTCGATGCAATTATGCAAGCTGCTGTGTGTAAGGAAAAAATTGGCTGGCGGAATGACTCACTCCACCTCTTGGTATTTGTGAGTGATGCTGATTCGCATTTTGGAATGGACAGTAAACTGGCGGGCATTGTCATTCCCAACGATGGGCTCTGTCACTTGGACAACAAGAATGAATACTCCATGTCAACTGTCATGGAATATCCAACAATTGGACAACTCATTGATAAATTGGTGCAAAACAATGTGTTACTGATCTTTGCTGTAACCCAAGAACAAGTTCCATTATATGAGAATTATGCAAAACTTATTCCTGGAACCACAGTCGGTCTACTTCACAAGGACTCTGGAAACATTCTCCAGCTGATCATCTCAGCTTATGATGAACTGCGGTCTGAGGTGGAGCTGGAAGTATTAGGAGACACAGAGGGACTCAACCTCTCCTTCACAGCTGTCTGTAGCAATGGTACCCTCTTCCCACACCAAAAGAAATGCTTGCACATGAAAGTGGGAGAAACCGCTTCATTCAATGTGACTGTGAGTATACCAAACTGTGAGAGAAAAGGCAGGCACATTATCATAAAGCCTGTGGGGCTGGGGGACACCCTGGATCTCCTCATCAGCCCAGAATGCAGCTGTGACTGTCAGAAAGAAGTGGAAGTGAACAGCTCCAAATGCCACGATGGGAACGGCTCCTTCCAGTGTGGTGTGTGCACCTGTAACCCGGGCCACATGGGCCCTCACTGCGAGTGTGGCGAGGACATGCTGAGCACAGATTCCTGCAAGGAGGCCCCCGACCGTCCCTCATGCAGTGGAAGGGGTGACTGCTACTGTGGGCAGTGCATCTGCCACTTGTCTCCCTACGGAAGTGTTTACGGACCTTACTGCCAGTGTGACAATTTCTCCTGTGTGAGACACAAAGGGCTGCTCTGTGGAGATAACGGCGACTGTGAGTGTGGCGAGTGCGTGTGCAGGAGTGGCTGGACCGGTGAGTACTGCAACTGCACCAGCAGCACAGATGCGTGCATCTCCGAAGATGGCTTGCTCTGCAGTGGGCGAGGGGACTGCAACTGTGGCGAGTGTGTCTGCACAGACCCTGGAGCCTCTGGAGCCACTTGTGAACGATGTCCTACCTGCAGTGACCCCTGTAACTCTAAACGGAGCTGCATTGAATGCCACCTATCTGCAGATAGCCAGCCTGGAGAACAATGTGCGGACAAATGCAAACTAGCGGGTGTAACCATCAGCGAAGAAGAAGATTTCTCAAAGGATAGTACTGTTTCCTGCTCCCTGCAGGGAGAAAATGAATGTCTTATAACATTCCTAATAAGTACAGATAACAAGGGGAGCACCATCATTCACAGCATCAATGAAAAAGACTGCCCAAAACCTCCAAACATTCCCATGATCATGTTGGGGGTTTCACTGGCTATTCTTCTCATCGGGGTTGTCCTTCTGTGCATTTGGAAGCTGCTGGTGTCATTTCATGACCGTAAAGAAGTTGCCAAATTTGAAGCAGAACGATCAAAGGCCAAGTGGCAGACAGGAACCAATCCATTATACAGAGGCTCTACTAGTACTTTTAAAAATGTAACCTATAAACACAGGGAAAAACAAAAGACAGACCTTTCCACAGATGGGTAA

Related Sequences

XP_004835941.1 Protein

Itgb6 PREDICTED: integrin beta-6 isoform X1 [Heterocephalus glaber]

Length: 808 aa      View alignments
>XP_004835941.1
MKTFKFTSQVSFQSSRELKRMGIELLCFFFLFLGRDDCVQGGCAMGGAETCGDCLLTGPQCAWCSQENFTHPSGVSERCDTPANLLAKGCQLIFIENPVSQVEILKNKPLSVGRQKNSSDIVQIVPQSLILKLRPGSEQTLQVQVRQTEDYPVDLYYLMDLSASMNDDLNTIKELGSLLSKEMSKLTSNFRLGFGSFVEKPISPFMKTTPEEIANPCSSIPYSCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSHFGMDSKLAGIVIPNDGLCHLDNKNEYSMSTVMEYPTIGQLIDKLVQNNVLLIFAVTQEQVPLYENYAKLIPGTTVGLLHKDSGNILQLIISAYDELRSEVELEVLGDTEGLNLSFTAVCSNGTLFPHQKKCLHMKVGETASFNVTVSIPNCERKGRHIIIKPVGLGDTLDLLISPECSCDCQKEVEVNSSKCHDGNGSFQCGVCTCNPGHMGPHCECGEDMLSTDSCKEAPDRPSCSGRGDCYCGQCICHLSPYGSVYGPYCQCDNFSCVRHKGLLCGDNGDCECGECVCRSGWTGEYCNCTSSTDACISEDGLLCSGRGDCNCGECVCTDPGASGATCERCPTCSDPCNSKRSCIECHLSADSQPGEQCADKCKLAGVTISEEEDFSKDSTVSCSLQGENECLITFLISTDNKGSTIIHSINEKDCPKPPNIPMIMLGVSLAILLIGVVLLCIWKLLVSFHDRKEVAKFEAERSKAKWQTGTNPLYRGSTSTFKNVTYKHREKQKTDLSTDG