Sequence details NCBI ID: XM_004835801.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Bloc1s6
Gene Name biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Entrez Gene ID 101707035

Database interlinks

Part of NW_004624731.1 (Scaffold)

For more information consult the page for NW_004624731.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

BLOC1S6 ENSG00000104164 (Human)

Gene Details

biogenesis of lysosomal organelles complex-1, subunit 6, pallidin

External Links

Gene Match (Ensembl Protein ID: ENSP00000220531, Human)

Protein Percentage 84.3%
CDS Percentage 79.46%
Ka/Ks Ratio 0.09502 (Ka = 0.1035, Ks = 1.0895)

Bloc1s6 ENSMUSG00000005804 (Mouse)

Gene Details

biogenesis of organelles complex-1, subunit 6, pallidin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000005954, Mouse)

Protein Percentage 82.56%
CDS Percentage 76.74%
Ka/Ks Ratio 0.06848 (Ka = 0.1067, Ks = 1.5583)

Bloc1s6 ENSRNOG00000037160 (Rat)

Gene Details

biogenesis of lysosomal organelles complex-1, subunit 6, pallidin (Bloc1s6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000052934, Rat)

Protein Percentage 81.98%
CDS Percentage 76.16%
Ka/Ks Ratio 0.06349 (Ka = 0.1133, Ks = 1.785)

Genome Location

Sequence Coding sequence

Length: 861 bp    Location: 13791702..13775414   Strand: -
Raw sequence   
>XM_004835801.1
ATGCACAAATTACGGCCCTGTTTCAAATGTGTTAATGGAGTTGAACACAAAAGTCTCCGGAAATCAGGCCGGCCTGTCCGCGCCCAGGGCTCTTTCGGTTTCCGTCACCAGCCGGTGCACTCATTCTCTCCGACGGCGACGCAGGGACCGGAGCGATACGGAACTCCTCCTCCCGACGCAGCAGCACCCGGAACCTCACCGGGACGCCTGACGGCTGTCACGTGCCCCGAGTTGGCCGGCTTCCGTCTCCTCATTTCCGGGTGGCCCCCCCCCCCCTCCCGCCACTTCGGTCCTGCCGGGCGCTGGCGGCGGAGGGTTCTTCCTTCCGGCTTCGGACGGTCGCCGGGCTGCCCCTTCCCGGGGCCCAGCGGGAGGGACATGAGCGTCCCGGGGTCACCGCCCCCAGATGGCGAGCCGACGCTGGGGGTGAGCGACGCTTCTCCCGATGAAGGGTTAATCGAGGACTTGCTGGTGGAAGACAGAGCTGTGGAGCAGCTGGCGGAGGGTCTGCTTTCTCACTACCTGCCGGACCTGCAGAGATCAAAACAAGCCCTTCAGGAGCTCACACAGAACCAGGTTGTATTATTAGATACTTTGGAACAAGAGATTTCAAAATTTAAAGAATGTCATTCTATGTTGGATATTAATGCTTTGTTCATGGAGGCCAAGCACTACCATGCCAAGCTGGTGAGCATAAGGAGGGACATGCTGCTGCTGCACGAGAAGACGTCCAAGCTGAAGAAGAGAGCGCTTAAACTGCAGCAGAAGAGGCAAAAAGAAGAGTTGGAAAAGGAGCAGCAGCGGGAGAAGGAGTTCGAGAGAGAGAAGCAGCTGACGGCCAGGCCGGCCAAAAGGACATGA

Related Sequences

XP_004835858.1 Protein

Bloc1s6 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6 [Heterocephalus glaber]

Length: 286 aa      
>XP_004835858.1
MHKLRPCFKCVNGVEHKSLRKSGRPVRAQGSFGFRHQPVHSFSPTATQGPERYGTPPPDAAAPGTSPGRLTAVTCPELAGFRLLISGWPPPPSRHFGPAGRWRRRVLPSGFGRSPGCPFPGPSGRDMSVPGSPPPDGEPTLGVSDASPDEGLIEDLLVEDRAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFMEAKHYHAKLVSIRRDMLLLHEKTSKLKKRALKLQQKRQKEELEKEQQREKEFEREKQLTARPAKRT