Sequence details NCBI ID: XM_004835789.1 (Coding sequence)

Details from NCBI annotation

Gene Symbol Scn11a
Gene Name sodium channel, voltage-gated, type XI, alpha subunit
Entrez Gene ID 101723747

Database interlinks

Part of NW_004624731.1 (Scaffold)

For more information consult the page for NW_004624731.1 (Scaffold)

Genome Location

Sequence Coding sequence

Length: 5274 bp    Location: 2065228..2203150   Strand: +
Raw sequence   
>XM_004835789.1
ATGGATGACAGGTGCTACCCAGTGATCTTCCCAGATGAGCGAAATTTCCGTCCCTTCACTTCCGACTCCCTGGCTGCAATAGAGAAGCGGATTGCTATCCAAAAAGAGAAAAAGAAGTCCAAAGACAAGACAGCATCTGAACCCCTGCCTCGACCTCAGCTTGACCTAAAGGCCTCTAGGAAGTTGCCCAAGCTCTATGGCAACATTCCACATGAGCTGGTAGCAAAGCCCCTGGAAGACTTGGACCCATTCTACAGAAATCATAAGACATTTATGGTGTTGAACAAGAAGAGAACAATCTACCGCTTCAGTGCCAAGCGTGCCTTGTTCGTTTTTGGACCTTTCAATCCCATCAGAAGTTTAGCCATTAAAATCTTGGTCCATTCATTGTTCAGCATGTTCATCATCTGCACCGTTGTGGTCAACTGTTTGTTCATGGCTATGGCTGGTGTTAAGGAGAGCAACAAGCCAAGAACTGACATTGCTGAATGTATCTTCACTGCAATTTATATTTTGGAAGCTCTGATAAAAATACTTGCAAGAGGTTTTATCCTGGATGAATTTTCTTTCCTTCGAGATCCATGGAACTGGCTTGATTCCATTGTCATTGGAACAGCAATTGCAGATTTAGATCCTAATTCCCAAATCAAACTGTTGTCTCTACGTACCTTCCGAGTGATCAGAGCGCTGAAAGCAATTTCAGTAGTTTCTGGTCTGAAGGTCATTGTGGGGGCCTTACTGCGCTCAGTGAAGAAGCTTGTTGATGTGATGGTCCTCACCCTCTTTTGCCTCTGCATCTTCGCCCTCGTGGGTCAGCAGCTTTTCCAGGAAATTCTGAGCCAGAAATGTGTCAAGATAGGCTGTAACAGTACCCGTGAAACCAATGAATCTTGCTTTGTAATGAAAAATAATTCCACAGAACCCATAATGTGTGGCAGCTGGAATGCCAGCAGGTGTCCCCCAAATTCTAGATGTGAATCCACTGGCGTTAATCCTGACTATAATTACACAAATTTTGATAACTTTGGCTGGTCTCTTCTTGCCATGTTCCGGCTTATGACTCAAGACTCCTGGGAGAAGCTTTATCGACAGACCTTGCATACCGCTGGGCCCTACTCAGTCTTCTTCTTCGTGGTGGTCATCTTCCTGGGCTCCTTCTACCTGATTAACTTAACCCTGGCAGTTGTCACCATGGCTTATGAGGAGCAGAGCAGGAATGTAGCTGCAGAGACTGAGGCCAAGGAAAAGATGTTTCAGGAAGCCCAGAAGCTGATAAAGGAAGAAAAGGAGGCTCTGATTGCCATGGGAATTGACAGAAGTTCACTTAATTCTCTACAAACATCATCTTTTTCCCCAAAGAAGAGAAAGTTCTTTGGTAAAGAGAAAAGAAAATCTTTCTTTTTAAGAGCATCTAAGAAAGACCAAGCTCAAGGATCAGATTCTGAGGAAGATTCCTCAAAAAATCCACCTCTCCTAGAGCAAACCAAGAAATTATCTCAGAATCTTCCAGTGGACATCTTTGATGAGCATGGAGACCCCTTGCAAAGGCAGAGGGCACTGAGTGCTGTCAGCATCATCACCATTACCATGCAGGAGCAAGAAAAGCTAAAGCAGCCTTGTCTCCCATGTGGAGAAAAGTTGATATCCAAATACCTTGTGTGGAACTGTAGTCCCAAGTGGCTGTGCATCAAGAAGGCCCTGAAAATTGTGATGACTGACCCCTTTACTGAGTTGGCCATCACCATCTGCATTATAATCAATACCATCTTCTTGGCCATGGAGCATCATGGAATGAATACAGATTTTAAGAAAATGTTGAAAACAGGGAATTGGGTTTTCACTGGCATTTTTATGGCAGAAATGTGCCTAAAAATCATTGCACTTGATCCCTACCACTACTTTCGCCATGGCTGGAACATTTTTGACAGCATCGTTGCTGTTGTGAGTCTTACAGAAGCCATAGCCGCGAAGTGGGTGTTCCTGCGCTCCTTCAGAGTGCTGAGGGTGTTCAAGTTAGCCAAGTCCTGGCCAACCTTAAACACACTAATTAAGATAATCGGCCACTCTTTTGGAGCCCTTGGAAACCTGACTGTGGTCCTAGCCATCGTGCTCTTTATTTTCTCAGTAGTTGGCATGCAGCTCTTTGGCTATAAATTCTGTTCCACAAGGAATTCACCCTCCTGTAATTCTAGTAGTGACTCCTGTCAACGGCGCTGGCACATGGGGGATTTCTACCATTCCTTCCTGGTGGTGTTTCGCATCCTCTGTGGGGAATGGATCGAAAACATGTGGGAATGTATGCGAGAAGTTAATATACCACTGTGTGTTATTGTCTTCGTGTTGATCATGGTGATAGGAAAACTTGTGGTGCTCAACCTTTTCATTGCTTTACTGCTAAATTCCTTCAGCAATGAAGAGAGAAATGAAAACCTAGGAGAGGCCAAGAAAACCAAAGTTCAGTTAGCACTGGATCGGTTCCGCCGGGCTTTTTCTTTTGTGATTCACACTCTTGAGCATTTCTGTCGCAAGTGGTTCAGGAAGCAAAAGTTACCAAAGGAAAAAGAGACGACAGGAGACTCAGCTGCAGACAGCAAAGACATTCCCCAGGTCACAGAAATGAAAAGGGAATCAGAGCCCCAGGAGGAGTTTGATGTACTAGCCTCTGCATGGAAGACCTCAGACATGGGCTGTGATCACATTTGGTTGGCCCCACTTGCAAAGGAAGAGAATGATCTTGGATATACTTATAGAGACGATGAATTGCCCATCACACCACCTAATGCTGAAAGACAGGGCTGTGACCATCAAGGGACCAAGAGGCACACCAGCCCAGGAGTTCAAAGTGTGGAAATTGATGTGTTCTCTGAAGATACTTCTTTGACCACACAGAATCCTCGGAAGAAGTCTGATGCGATCAGTGTGTTATCAGAATGCAGTACTATTGATCTGCAGGATCCTGTTGGAAATTTATGTAAAATGGTCCACCCCTCAAAGCAACCAGAGAGATGTTTGCCCAAAGGACTGAGTTCTTTCCTTCCATGCTGTAAAATGGACAAGAGAACATCACCCTGGGTCATTTGGTGGAACCTACGGAAAACCTGCTACCAAATAGTCAAACACAGTTGGTTTGAGAGCTTTATTATCTTTGTGATTCTGCTGAGCAGTGGGGCACTGGTATTCGAAGATATTCATCTTCCTGAATATCCCCACATCCAAAATTTACTAAATTGTACTGACAATATTTTCACGTCTATTTTTGTTCTGGAGATGGCTCTGAAATGGGTGGCCTTTGGATTTAGGAAGTATTTCACCAATGCCTGGTGCTGGCTTGATTTCATCATTGTGGTTGTCTCGGTGGTGGTCAGTTTTGTGGACCTACAGAAATGGAAAGCCTTACGGACTCTGCGAGCACTGAGGCCTCTTCGAGCACTGTCTCGATTTGAAGGAATGAAGGTGGTGGTTAATGCTCTCATAGGGGCCATACCAGCCATTGTGAATGTTTTGCTTGTCTGCCTCATTTTCTGGCTCACGTTTTGTATTCTGGGAGTAAACTTCTTTTCTGGAAAGTTTGGAAATGTAAATGATAACAAAATTCTAAGAGATGACAAATGCACTAATGAAAATTATACCTGGAACCCCCCAAATGTCAACTTTGACCATGTGGGGATGGCTTACCTCGCTCTGCTGCAAGTGGCAACATATAAAGGCTGGATGGACATTATGTATGCCGCTGTTGATTCCACAGAAGAAGGACTACCACAATTTGAGGCAAATGCACTCATGTACCTTTACTTCATAGTTTTTATCATCTTTGGCTCATTCTTTACACTGAATCTCTTCATTGGCGTTATTATTGACAACTTCAATCAACAGCAAAAAAAGATAAGTGGCCAAGATATTTTTATGACAGAAGAACAGAAGAAATACTATAATGCAATGAAAAAATTAGGAACCAAAAAACCTCTAAAACCCATTCCAAGGCCTCTGAACAAATGTCAAGGTCTTGTGTTTGACCTGGTCACACACCAGGTCTTTGATGTCTTCATCATGAGTCTCATTGTCCTAAACATGGTTTGTATGATGGTTGAGACACGAGACCAATCCCCAGACACAGACTCAGTCTTTGAACATCTCAACACAGTCTTTGTGACCATCTTTACAGTAGAATGTCTCATCAAAGTGTTTGCTTTGAGGCAATATTATTTTATCAATGGCTGGAATTTATTTGATTGTGTGGTCGTGGTTCTTTCTATCATAAGTACACTGGTTACCTTAGTGGGAAAAAGCAAGACCATTCCTTTTCCTCCAACACTCTTCAGAATTGTCCGCTTGGCTCGAATTGGCCGCATCCTGAGACTTGTTCGGGCAGCGCGAGGAATCAGGACTCTCCTTTTTGCTCTGATGATGTCCCTTCCCTCTCTATTCAACATCGGTCTTCTACTCTTTCTGGTTATGTTTATTTATGCCATTTTTGGTATGAACTGTTTTTCCAAAATAGAGAGAAAAGGTGGAATTGATGATATATTCAACTTTGATACTTTCACAGGCAGCATGCTCTGTCTCTTCCAGATAACCACATCAGCAGGCTGGGATGCTCTCCTTAACCCCATGCTGGGACCTAACTCCCCAGACAAACCTTACCTCCATGGTGTAGCCATAGCCTACTTTGTCAGTTACATCATCATCTCCTTTCTCATTGTTGTCAACATGTATATTGCTGTGATTCTAGAGAATTTCAATGTAGCCACTGAAGAAAGTGAGGAGCCTTTGTGTGAAGATGACTTTGAAATGTTCTATGAGATCTGGGAGAAGTTTGACCCCGAAGCAACACAGTTTATCAAGTATTCTGCCCTTTCTGACTTTGCTGATGCCTTGCCTGAGCCTCTGCGTGTGGCAAAACCAAATAAATTCCAATTTCTAGTAATGGACTTGCCTATGGTAAGTGGAGATCGCCTCCACTGCATGGACATTCTCTTTGCTTTCACCACCAGGGTCCTCGGTGACTCCAGTGGCCTGGATACTATGAAAACAATGATGGAGGAGAAGTTCACGGAAGCCAACCCTTTCAAGAAGTTATATGAGCCCATAGTCACTACCACCAAGAGAAAGGCAGAGGAAGAAGGTGCTGCTGTTATTCAAAAGGCCTTTCGGAAGTACATGGTGAATATGACCAAGTGTGCTGTGGAGGCCAGGCCTCCTTCACCCCTCCAGACACTCAGCAATGGAGACCTGTCTGGCTCTGAAGTGGCCAAGCTCAAGGTGCATTATGACTGA

Related Sequences

XP_004835846.1 Protein

Scn11a PREDICTED: sodium channel protein type 11 subunit alpha [Heterocephalus glaber]

Length: 1757 aa      
>XP_004835846.1
MDDRCYPVIFPDERNFRPFTSDSLAAIEKRIAIQKEKKKSKDKTASEPLPRPQLDLKASRKLPKLYGNIPHELVAKPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRALFVFGPFNPIRSLAIKILVHSLFSMFIICTVVVNCLFMAMAGVKESNKPRTDIAECIFTAIYILEALIKILARGFILDEFSFLRDPWNWLDSIVIGTAIADLDPNSQIKLLSLRTFRVIRALKAISVVSGLKVIVGALLRSVKKLVDVMVLTLFCLCIFALVGQQLFQEILSQKCVKIGCNSTRETNESCFVMKNNSTEPIMCGSWNASRCPPNSRCESTGVNPDYNYTNFDNFGWSLLAMFRLMTQDSWEKLYRQTLHTAGPYSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQSRNVAAETEAKEKMFQEAQKLIKEEKEALIAMGIDRSSLNSLQTSSFSPKKRKFFGKEKRKSFFLRASKKDQAQGSDSEEDSSKNPPLLEQTKKLSQNLPVDIFDEHGDPLQRQRALSAVSIITITMQEQEKLKQPCLPCGEKLISKYLVWNCSPKWLCIKKALKIVMTDPFTELAITICIIINTIFLAMEHHGMNTDFKKMLKTGNWVFTGIFMAEMCLKIIALDPYHYFRHGWNIFDSIVAVVSLTEAIAAKWVFLRSFRVLRVFKLAKSWPTLNTLIKIIGHSFGALGNLTVVLAIVLFIFSVVGMQLFGYKFCSTRNSPSCNSSSDSCQRRWHMGDFYHSFLVVFRILCGEWIENMWECMREVNIPLCVIVFVLIMVIGKLVVLNLFIALLLNSFSNEERNENLGEAKKTKVQLALDRFRRAFSFVIHTLEHFCRKWFRKQKLPKEKETTGDSAADSKDIPQVTEMKRESEPQEEFDVLASAWKTSDMGCDHIWLAPLAKEENDLGYTYRDDELPITPPNAERQGCDHQGTKRHTSPGVQSVEIDVFSEDTSLTTQNPRKKSDAISVLSECSTIDLQDPVGNLCKMVHPSKQPERCLPKGLSSFLPCCKMDKRTSPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDIHLPEYPHIQNLLNCTDNIFTSIFVLEMALKWVAFGFRKYFTNAWCWLDFIIVVVSVVVSFVDLQKWKALRTLRALRPLRALSRFEGMKVVVNALIGAIPAIVNVLLVCLIFWLTFCILGVNFFSGKFGNVNDNKILRDDKCTNENYTWNPPNVNFDHVGMAYLALLQVATYKGWMDIMYAAVDSTEEGLPQFEANALMYLYFIVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQDIFMTEEQKKYYNAMKKLGTKKPLKPIPRPLNKCQGLVFDLVTHQVFDVFIMSLIVLNMVCMMVETRDQSPDTDSVFEHLNTVFVTIFTVECLIKVFALRQYYFINGWNLFDCVVVVLSIISTLVTLVGKSKTIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMNCFSKIERKGGIDDIFNFDTFTGSMLCLFQITTSAGWDALLNPMLGPNSPDKPYLHGVAIAYFVSYIIISFLIVVNMYIAVILENFNVATEESEEPLCEDDFEMFYEIWEKFDPEATQFIKYSALSDFADALPEPLRVAKPNKFQFLVMDLPMVSGDRLHCMDILFAFTTRVLGDSSGLDTMKTMMEEKFTEANPFKKLYEPIVTTTKRKAEEEGAAVIQKAFRKYMVNMTKCAVEARPPSPLQTLSNGDLSGSEVAKLKVHYD