Details from NCBI annotation

Gene Symbol Upk1b
Gene Name uroplakin 1B, transcript variant X2
Entrez Gene ID 101708339

Database interlinks

Part of NW_004624731.1 (Scaffold)

For more information consult the page for NW_004624731.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

UPK1B ENSCPOG00000003759 (Guinea pig)

Gene Details

uroplakin 1B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003396, Guinea pig)

Protein Percentage 95.0%
CDS Percentage 93.59%
Ka/Ks Ratio 0.11337 (Ka = 0.0239, Ks = 0.2107)

UPK1B ENSG00000114638 (Human)

Gene Details

uroplakin 1B

External Links

Gene Match (Ensembl Protein ID: ENSP00000264234, Human)

Protein Percentage 91.92%
CDS Percentage 90.38%
Ka/Ks Ratio 0.12019 (Ka = 0.0413, Ks = 0.3436)

Upk1b ENSMUSG00000049436 (Mouse)

Gene Details

uroplakin 1B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000052469, Mouse)

Protein Percentage 92.31%
CDS Percentage 87.69%
Ka/Ks Ratio 0.07417 (Ka = 0.0391, Ks = 0.5266)

Upk1b ENSRNOG00000027380 (Rat)

Gene Details

uroplakin 1B (Upk1b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000004315, Rat)

Protein Percentage 90.77%
CDS Percentage 86.15%
Ka/Ks Ratio 0.07997 (Ka = 0.0489, Ks = 0.6109)

Genome Location

Sequence Coding sequence

Length: 789 bp    Location: 29005378..28976232   Strand: -
>XM_004835676.1
ATGAAGATGGCCAAAGATGATTCCACTTTTCGCTGCTTTCAAGGCCTGCTGATTTTTGGACATGTGATTGTTGGTATGTGTGGCATTGCCCTGATGGCAGAGTGCATCTTCTTTGTGTCTGACCAGCATAGTCTCTATCCCCTACTTGAAGCCACCAACAATGATGACATCTATGGGGCAGCCTGGATCGGCATGTTTGTGGGCATCTGCCTCTTCTGCCTGTCTGTCCTAGCCATTATAGGGACCATGAAGTCCAGCAGGAAACTTCTCCTAGTGTATTTCATTCTGATGTTTATAGTATATGGCTTTGAAGTGGCATCTTGTATCACAGCAGCAACACAACGAGACTTTTTCACACCCAACCTCTTCCTGAAGCAGATGCTGGTGAGGTACCAAAACAACAGCCCTCCAACCAATGATGATCAATGGAAAAACAATGGTGTCACCAAAACCTGGGACAGGCTCATGCTGCAGGACCACTGCTGTGGTGTAAATGGTCCATCTGACTGGCAGAAATACACGTCTGCCTTCCGGACTGAGAACAATGATGCGGACTACCCCTGGCCTCGGCAGTGCTGTGTTATGAACAATCTTAAAGAACCATTGAACCTGGAGGCTTGTAAGCTGGGAGTGCCCGGTTATTACTACAATCAGGGCTGCTATGAACTGATATCTGGGCCAATGAACCGCCATGCTTGGGGCGTTGCCTGGTTTGGATTTGCCATTCTCTGCTGGACTTTTTGGGTTCTCCTAGGTACCATGTTCTACTGGAGCAGAACTGAATATTAA

Related Sequences

XP_004835733.1 Protein

Upk1b PREDICTED: uroplakin-1b isoform X2 [Heterocephalus glaber]

Length: 262 aa      View alignments
>XP_004835733.1
MKMAKDDSTFRCFQGLLIFGHVIVGMCGIALMAECIFFVSDQHSLYPLLEATNNDDIYGAAWIGMFVGICLFCLSVLAIIGTMKSSRKLLLVYFILMFIVYGFEVASCITAATQRDFFTPNLFLKQMLVRYQNNSPPTNDDQWKNNGVTKTWDRLMLQDHCCGVNGPSDWQKYTSAFRTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGYYYNQGCYELISGPMNRHAWGVAWFGFAILCWTFWVLLGTMFYWSRTEY