Details from NCBI annotation

Gene Symbol Lmcd1
Gene Name LIM and cysteine-rich domains 1, transcript variant X1
Entrez Gene ID 101715617

Database interlinks

Part of NW_004624731.1 (Scaffold)

For more information consult the page for NW_004624731.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LMCD1 ENSCPOG00000013446 (Guinea pig)

Gene Details

LIM and cysteine-rich domains 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012107, Guinea pig)

Protein Percentage 95.62%
CDS Percentage 91.96%
Ka/Ks Ratio 0.05249 (Ka = 0.0207, Ks = 0.395)

LMCD1 ENSG00000071282 (Human)

Gene Details

LIM and cysteine-rich domains 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000157600, Human)

Protein Percentage 93.7%
CDS Percentage 89.5%
Ka/Ks Ratio 0.06217 (Ka = 0.0325, Ks = 0.5234)

Lmcd1 ENSMUSG00000057604 (Mouse)

Gene Details

LIM and cysteine-rich domains 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032376, Mouse)

Protein Percentage 92.05%
CDS Percentage 87.31%
Ka/Ks Ratio 0.05826 (Ka = 0.0412, Ks = 0.7075)

Lmcd1 ENSRNOG00000005690 (Rat)

Gene Details

LIM and cysteine-rich domains 1 (Lmcd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007523, Rat)

Protein Percentage 92.88%
CDS Percentage 87.95%
Ka/Ks Ratio 0.05692 (Ka = 0.0367, Ks = 0.6449)

Genome Location

Sequence Coding sequence

Length: 1098 bp    Location: 3158687..3218214   Strand: +
>XM_004835253.1
ATGGCAAAGGTAGCAAAGGACCTCAACCCACGAGTGCAGAAGATGTCCCTGGGCCAGCAGCAGTCAGCAAGAGCTGTGGCTTGCTTGAGATGCAAGGGGACGTGTTCAGGCTTCGAGCCACATTCATGGAGGAAAATATGCAAATCATGCAAATGCAGCCAGGAAGACCACTGCCTAACCTCTGACCTGGAAGATGATCGGAAAATTGGCCGCCTGCTGATGGACTCCAAGTACTCTACCCTCACTGCCAGGGTGAAAGGAGGGGATGGCATCCGCATTTACAAGAGGAACCGAATGATCATGACCAACCCTATTGCCACTGGGAAAGACCCCACCTTTGACACCATCACCTATGAGTGGGCTCCCCCTGGAGTTACCCAGAAACTGGGCCTGCAGTACATGGAGCTCATTCCCAAGGAGAAACAGCCAGTGACAGGCACTGAGGGGGCCTACTACCGCCGACGCCAGCTCATGCATCAGCTCCCCATCTATGACCAGGACCCCTCGCGCTGCCGTGGACTTTTGGAGAATGAGCTGATGGTGATGGAAGAGTTTGTCAAGCAGTATAAGAGCGAGGCCCTGGGGGTGGGCGAAGTGGCCCTCCCAGGGCAGGGTGGCTTGCCCAAAGAGGAAGGGAAGAACCAGGACAAGCCAGAGGGTATGGAGACCACTGCACCCACCACCAATGGCAACCTCGGTGACCCAGCCAAGGAAGTGGAATATGTCTGCGAGCTCTGCAAGGGCGCAGCCTCCAGCGACAGCCCTGTGGTCTATGCGGACAGGGCTGGCTACAGAAAGCAGTGGCACCCAGCTTGCTTTGTGTGTGCGCAGTGCTCCGAGCCACTGGTGGACCTCATCTACTTCTGGAAGGACGGTGCGCCCTGGTGTGGCCGCCACTACTGCGAGAGCCTGCGGCCACGGTGCTCAGGTTGCGATGAGATTATATTCTCAGAGGACTACCAGCGTGTGGAAGAGCTCGCCTGGCACCGGAAGCACTTTGTCTGCGAAGGTTGTGAGCAGTTGCTGAGTGGCCGGGCGTACATTGTCACCAAGGGTCAGCTCTTGTGCCCCACTTGCAGCAAGTCCAAGCGCTCCTGA

Related Sequences

XP_004835310.1 Protein

Lmcd1 PREDICTED: LIM and cysteine-rich domains protein 1 isoform X1 [Heterocephalus glaber]

Length: 365 aa      View alignments
>XP_004835310.1
MAKVAKDLNPRVQKMSLGQQQSARAVACLRCKGTCSGFEPHSWRKICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLENELMVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKNQDKPEGMETTAPTTNGNLGDPAKEVEYVCELCKGAASSDSPVVYADRAGYRKQWHPACFVCAQCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFSEDYQRVEELAWHRKHFVCEGCEQLLSGRAYIVTKGQLLCPTCSKSKRS