Details from NCBI annotation

Gene Symbol Col25a1
Gene Name collagen, type XXV, alpha 1
Entrez Gene ID 101706837

Database interlinks

Part of NW_004624830.1 (Scaffold)

For more information consult the page for NW_004624830.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL25A1 ENSCPOG00000012595 (Guinea pig)

Gene Details

collagen, type XXV, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011331, Guinea pig)

Protein Percentage 94.04%
CDS Percentage 91.32%
Ka/Ks Ratio 0.18801 (Ka = 0.0396, Ks = 0.2108)

COL25A1 ENSG00000188517 (Human)

Gene Details

collagen, type XXV, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000382083, Human)

Protein Percentage 90.49%
CDS Percentage 87.88%
Ka/Ks Ratio 0.16362 (Ka = 0.0557, Ks = 0.3407)

Col25a1 ENSMUSG00000058897 (Mouse)

Gene Details

collagen, type XXV, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000079210, Mouse)

Protein Percentage 90.06%
CDS Percentage 86.24%
Ka/Ks Ratio 0.15088 (Ka = 0.0624, Ks = 0.4137)

Col25a1 ENSRNOG00000050706 (Rat)

Gene Details

Protein LOC687064

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000064468, Rat)

Protein Percentage 92.54%
CDS Percentage 86.95%
Ka/Ks Ratio 0.13133 (Ka = 0.0537, Ks = 0.4088)

Genome Location

Sequence Coding sequence

Length: 2418 bp    Location: 440006..839493   Strand: +
>XM_004866295.1
ATGAGGTGGGCGGGACGTCGCAGCGCGCTCTGCGGAGGGTATTTAAGGCCCGCGCACCCGGAGCCCAGAGACGCTTCGGGCAGCCTAGCTCGGCGCTTTCCCTCCCTTCCCGCCTTCGGCCGCGCCTTCGCCCTAGCGGCTCCGGGTCCCGGCGGCACGCGGCGCAGCGCTGGGCCAAGCAGAGGTGCGCGAGGTTCCGAAGCAACAGGTCGGGCGGCCGCGCCGTCCCCACCACCAGGTGGCCTCGCAGGTGTCCGGGCCCCGCCACCGCCCGCGGGATGCGCCTGGGCCGCCGGTGCTCGCGCTGAGCCCGTTCCGCCCGCAGCTGCTGCGCCGCAGCCTCGGACTGAACTTCGTGGGCGTCGCCCCCTCCGAGACCGCGGGCCCAGGCTGGAGGGAGAAGCCCAGCCCGCCGCCGCCGCGATGCCGCCGAAGGAGCCCGCTGCGAGGGCGGCCGGGCGGGAGCCGGGGCCCGAGGCGCCCCCCGGCCGGCGCTGTGCCCGCGCCGTGCCCCCGTGTGCCGCGCTCGCCACGGTCCTGTCTGTGGTCGCAGTGGCCTCGTGTCTGTACCTCGGGGCGAAGACCGGCGAGCTCCAGGCGAGGATCGCCGCGCTCGAGTCCGCCGGAGAAGCCCCCTCCCTCCGCCCGCTGCCCGTCAGCCTGGATCAGCTGAAGGCCGTGGTGCAGGAGAAGGTGGAGCGGCTGCTGGCTCAGAAGTCCTACGAACATATGGCTAAAGTACGAGTCTCGAGAGAAGCGCCTTCAGAGTGCAACTGCCCAGCAGGCCCTCCGGGGAAAAGAGGGAAGAGGGGCCGAAGAGGAGAATCTGGTCCTCCTGGTCAGCCTGGTCCTCAGGGTCCTCCTGGTCCAAAAGGTGATAAGGGGGAACAAGGTGATCAGGGACCTCGGATGGTGTTTCCTAAAATCAATCATGGCTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGCCTGATTAAGGGTGACCAAGGCCAGGCAGGGCCCCCGGGACCCCCAGGCCCTCCAGGTCCCAGAGGGCCCCCTGGGGACACCGGGAAGGACGGCCCCCGAGGGATGCCAGGAGTGCCTGGTGAACCAGGGAAGCCCGGAGAACAAGGCTTAATGGGTCCTCTGGGGCCTCTGGGACAAAAGGGTTCTCTTGGAGCACCTGGGATTCCAGGGATGAATGGGCAAAAGGGTGAGCCTGGGTTGCCTGGAGCTGCAGGACAGGACGGGGCCCCTGGACTAGAGGGAGAACCTGGAAAACAAGGAGAAAAGGGAGACGCTGGAGACAGAGGCCCCAAAGGTGACACGGGAGAAAAGGGTGATCCCGGATCATCTGCTGCAGGAATCAAGGGAGAACCTGGAGAATCTGGTCGCCCAGGGCAAAAGGGTGAACCAGGGCTTCCCGGGCTTCCTGGGCTTCCGGGGATCAAGGGAGAACCAGGTTTCATTGGTCCTCAAGGGGAACCAGGCTTACCAGGGTTACCGGGAACAAAAGGCGAGCGTGGGGAGGCAGGGCCACCAGGAAGAGGGGAGCGAGGCGAGCCCGGAGTCCCTGGGCCGAAGGGGAAACAAGGCGAATCAGGAACAAGAGGCCCAAAGGGGTCAAAGGGTGATCGTGGAGACAAAGGGGACTCTGGAGCTCTGGGACTGAGGGGTCCCCCAGGGCAAAAAGGGGATCCAGGAGCCACGGAGATCATAGACTACAATGGCAACCTCCAGGAAGCCTTACAGAGGATTACCACCTTAACTGTCACGGGTCCCCCTGGGCCTCCTGGACCTCAAGGACTACAAGGGCCAAAGGGCGAGGCAGGGTCTCCAGGGAACCCAGGAGTTGATGGAGAGCAGGGACTCAAAGGCTCAAAGGGAGACACAGGGGACCCAGGGGTGCCAGGTGAAAAAGGAGGAATTGGGCTTCCTGGATTACCGGGTGCCAATGGGATGAAAGGAGAAAAGGGAGACTCCGGACTGCCAGGCCCTCAAGGTCCTTCCATCATAGGCCCACCGGGCCCCCCAGGCCCCCACGGTCCTCCTGGCCCCATGGGACCCCATGGGCTTCCTGGACCCAAGGGAGCATCTGGCTTAGATGGAAAGCCAGGATCCCGGGGTACAGATGGTCCTGTGGGACCCCATGGCCCCGCCGGCCCCAAAGGAGAAAGAGGAGAAAAAGGAGCTGTGGGAGAGCCAGGACCCAGAGGGCCCTACGGCCTGCCTGGGAAAGATGGAGAGCCTGGTCTTGATGGCTTCCCTGGTCCTCGAGGCGAGAAAGGCGACCTAGGAGAAAAGGGAGAGAAGGGATTCCGTGGCGTTAAGGGGGAAAAAGGGGAGCCAGGCCAGCCTGGCTTGGACGGGCTGGATGCCCCTTGCCAATTGGGTCCGGATGGATTACCCATGCCCGGCTGCTGGCAGAAGTGA

Related Sequences

XP_004866352.1 Protein

Col25a1 PREDICTED: collagen alpha-1(XXV) chain [Heterocephalus glaber]

Length: 805 aa      View alignments
>XP_004866352.1
MRWAGRRSALCGGYLRPAHPEPRDASGSLARRFPSLPAFGRAFALAAPGPGGTRRSAGPSRGARGSEATGRAAAPSPPPGGLAGVRAPPPPAGCAWAAGARAEPVPPAAAAPQPRTELRGRRPLRDRGPRLEGEAQPAAAAMPPKEPAARAAGREPGPEAPPGRRCARAVPPCAALATVLSVVAVASCLYLGAKTGELQARIAALESAGEAPSLRPLPVSLDQLKAVVQEKVERLLAQKSYEHMAKVRVSREAPSECNCPAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPLGQKGSLGAPGIPGMNGQKGEPGLPGAAGQDGAPGLEGEPGKQGEKGDAGDRGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGVPGPKGKQGESGTRGPKGSKGDRGDKGDSGALGLRGPPGQKGDPGATEIIDYNGNLQEALQRITTLTVTGPPGPPGPQGLQGPKGEAGSPGNPGVDGEQGLKGSKGDTGDPGVPGEKGGIGLPGLPGANGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGASGLDGKPGSRGTDGPVGPHGPAGPKGERGEKGAVGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK