Details from NCBI annotation

Gene Symbol Col15a1
Gene Name collagen, type XV, alpha 1
Entrez Gene ID 101708400

Database interlinks

Part of NW_004624825.1 (Scaffold)

For more information consult the page for NW_004624825.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL15A1 ENSCPOG00000014886 (Guinea pig)

Gene Details

collagen, type XV, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013414, Guinea pig)

Protein Percentage 86.08%
CDS Percentage 88.44%
Ka/Ks Ratio 0.36032 (Ka = 0.0856, Ks = 0.2377)

COL15A1 ENSG00000204291 (Human)

Gene Details

collagen, type XV, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000364140, Human)

Protein Percentage 79.54%
CDS Percentage 83.47%
Ka/Ks Ratio 0.34845 (Ka = 0.1288, Ks = 0.3696)

Col15a1 ENSMUSG00000028339 (Mouse)

Gene Details

collagen, type XV, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099981, Mouse)

Protein Percentage 77.53%
CDS Percentage 78.25%
Ka/Ks Ratio 0.25778 (Ka = 0.1594, Ks = 0.6183)

COL15A1 ENSRNOG00000039197 (Rat)

Gene Details

collagen alpha-1(XV) chain precursor

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000017217, Rat)

Protein Percentage 77.32%
CDS Percentage 79.1%
Ka/Ks Ratio 0.25788 (Ka = 0.1516, Ks = 0.588)

Genome Location

Sequence Coding sequence

Length: 4086 bp    Location: 2042165..1939694   Strand: -
>XM_004865060.1
ATGGCGCCAAGGAGCAACTGGTGCCGGCGGTTGCTGCTGTCCATTTCTGCGCTCCTGTCCGCTGTCACCCGGACGCGCGTCTCGACAGACTCAGCCTCCCAAGGCCATCTGGACCTCACACAGCTCATCGGTGTCCCACTGCCCTCCTCCGTGTCCTTTGTCACAGGCTATAATGGCTTCCCAGCTTACAGCTTCGGACCTGGTGCCAACATAGGTCGCCCAGCCAGGACCCTCATCCCACCTGCCTTCTTCAGGGACTTTGCCGTCAGTGTCATGGCCAAGCCCAGCAGCACCCGAGGCGGGGTGCTTTTTGCCGTTACTGACGCCTTCCAGAAGGTCATTTACCTAGGCCTGCGGCTCTCGGGAGTGCAGGATGGCCACCAGCGGGTCATCCTTTACTACACGGAGCCTGGCTCCCACCTGTCCCACGAAGCTGCTGTTTTCTCGGTGCCTGTGATGACCAACAGGTGGAACCACTTTGCTGTGATCATCCAGGGGGAGGAAGTGACCCTGCTCATGGACTGCGAGGAGCACAGCCATGTCCTCTTCCAGCGGTCCTCCCAGCCTTTGACTTTCGAGCCCAGCACAGGAATCTTCGTGGGCAGCGCAGGTGCCACAGGGCTGGACAAATTCACTGGGTCCATACAGCAGCTGACCATCCACGCTGACCCCAGGGTTCCAGAGGAGCTGTGTGAAGCCCAGGAGTTGTCGGCATCAGGAGAGGGCAGCGGACTTCAGGAGACTGACACTGTCGCTGAGACCTTAGAGGCCATCACCTACACTCAAGCTCTGCCTAAAGAAGCAAAAGTTGAACCTATAAACATACCTCCAATCTCATCCTCTCCCCCTCCCCTGGAGGACATGGAGCTTTCTGGTGAACCTGTACCAGAAGGGACCCCAGAAACCAACTTAAGCATCAGCCAACACAACAGCCCTGAGCAAGGGTCCGGCGAGATCCTGAATGACACGCTGGAGCAGGTTCATTCTCTGGATGGAGACGCCATTTCTGATGTTGGCTCAGGAGACAGGACCTTCCTTGGTGCCACTGAAGAACAGGGCTCTGCAGCAACAGCAATAGGGGAGGATGAGGTGACCATCACCACAGCCCGGGAGGCAGAGGTCAGCAGCGTGCCCACAGGAGGACCAACCCTGGTCATGTCCACCCTAAACCCTCGGGAAGGGACCGCCCCAGGTCTGGAGGACGAAGAAGGTTCAGCAGCAGTGGGAGCAGGGGAGGCCGAGGTGCCCGTCAGCACTGCTGGGGAAGTAGAGTCAGGCAGCGTGTCCACTGTGGGGCCCACCCTCACCATGTCCACCCAGAGCCCCAGGGAAGAGACCACGCTGGGTCCAGGCAAAGAATGGTTAACCTCAGTTGCAGCTCCCACAGAAGTTCCCCTCAGTACTCCTGGAGAAGAGGAAGCCAGTGGAGCCTCCACAGACAACCTAGCTGTCCTCACACCCACAGTGGCCCCTGCACATGCCAGCAGGGCCTCCACAGATGGCCTGGCTGTACCTGATGACAAGGAAGACTTGGAGCCCCTGGCCACCGCTGGCAGAGAGGAGACTGGCAGCGCTCCCCCTGATGGGCTGCCGCTCCCGGTACCCACAGCGGCTCCTGAGGGACGGGTCACTCTGGCTCAACTAGTACATGGGGAAATGGAAGGACAGTCTGGACCTGAAGGAGAAAAGGTGGGTACCGAGGCAGTGGGCTCTGGCCTGGGCTGGGCCCTGGACATCGGCTCTGGCTCCGGGGACCTGGTGGACCAAGAGGAGTTCCTAAGGGGTCTCCCAGGCCCTCCAGGACCACCTGGCTTACCTGGGATTCCAGGAAAACCAGGAACTGATGTTCTTATGGGGCCTCCTGGCTCTCCTGGAGAAGATGGAGCTGCTGGTGAACCTGGGCTCCCGGGCCCTGAAGGAGAGCCTGGACTTGATGGAGCTGTGGGGCGTCCTGGGATGAAAGGGGAGAAGGGAGCAAGAGGGCCTAATGGCTCAGTTGGTGAAAAGGGCGACCCTGGCAACAGAGGCTTACCAGGGCCCCCAGGGAAAAATGGACAAGCTGGCACTCCTGGAGTCACGGGACCTCCGGGGCCCCCTGGACCCCCAGGGCCCCCAGGTCCTGGATGTGCAACAGGACTGGAATTTGAGGATACTGAGGGCTCGGGAAATATCAGGCTGCTGAATGAACCCAGAATCTCCAGGCCAACTGTTTCCAGTGGTCTCAAAGGAGACAAAGGAGACCAGGGACCCAAGGGTGAAAGGGGACTGGATGGAATCAGCACTGTGGGACCTCCAGGACCCAGGGGTCCCCCTGGGCGGATCGAGATCTTGTCTAGTTCTTTGGTCAACATCACTCATGGATCCTTGAATTTCTCCAACATTCCTGAGCTCCTAGGGCCTCCGGGGCCTGATGGTGTGCCTGGGCTGCCTGGATTCCCAGGCCCTAGAGGACCAAAAGGTGACACTGGCTTGCCTGGATTTCCAGGACTCAAAGGAGAACAGGGTGAGAAGGGCGAGCCAGGTGCCATCCTGACGGGGGATGTTCCTCTGGAAAGGCTGAAGGGGAAAAAGGGTGAGCCTGGACTGCATGGAGCCCCTGGACCAATGGGTCCCAAGGGACCACCAGGACACAAAGGAGAATTTGGCCTCCCTGGACGACCTGGTCGCCCAGGACTGAATGGCATCAAGGGTGCCAAAGGAGATCGAGGAATAATGATGCAGGGCCCACCTGGCCTACCTGGTCCTCCAGGCCCCCCAGGACCACCTGGAGCTGTGGTTAACATCAAAGGAGCTGTGTTCCCAGTACCTGTCCGGCCACACTGCAAAATGCCACTTGGTACCACACAACCTGGGGATCCAGAGCTCATCACCTTCCACGGAGTTAAAGGAGAGAAAGGATCCTGGGGTCTTCCTGGCTCAAAAGGAGAAAAAGGCGACCAAGGAGCCCAGGGACCACCAGGTCCTCCTGTTGATCCAGCTTACCTGAGACATTTCCTGAACAGCTTGAAGGGGGAGAATGGAGACAGGGGATTCAAAGGAGAAAAAGGAGATTCTAATGGCAACTTCTTTGTGGCTGGGTCTCCAGGCCTGCCAGGAAATCCAGGCCTGGCTGGACAGAAAGGGGAGACTATCATTGGACCCCAAGGACCCCCAGGAATTCCTGGCCTGCCTGGGCCACCTGGTTTTGGAAGACCTGGTGCCCCTGGGCCACCAGGACCCCCTGGGCCTCCAGGACCTCCCGCTATTCTGGGTGCAGCTGTGGCTCTTCCAGGCCCACCTGGCCCTCCAGGACAGCCAGGGCTTCCCGGATCCAGAAATTTGGTCACGGCATTCAGCAGTATGGATGACATGCTGCAGAAAGCACATTTGGTCATAGAAGGAACATTCATCTACCTGAGGGACAGCACAGAGTTCTTCATTCGCGTCCGAGATGGCTGGAGAAAATTACAGCTGGGAGAACTCATCCCCATCCCTGCCGACAGTCCTCCACCCCCTGCGCTTTCCAGCAATTCATATCAGCTCCAGCCTCCACTGAACCCTATTTTAAGTGCCAATTACGAGAATCCTGTGCTGCACTTGGTTGCTCTAAACATGCCATTTTCTGGGGACATTAGAGCTGATTTTCAGTGCTTCCAACAGGCCAGGGCTGCAGGACTATTGTCCACTTTCCGAGCATTCTTATCTTCCCATTTGCAAGATCTCTCCACAGTTGTGAGGAAGGCAGAGAGATACAGCCTTCCAATAGTAAACCTCAAGGGCCAAGTACTTTTTAATAATTGGGACTCGATTTTTTCTGGTGATGGAGGTCAGTTCAATACACATGTTCCAATATACTCCTTTGATGGCCGAGATGTGTTGACAGATCCTTCTTGGCCCCAGAAGGTCGTTTGGCATGGCTCCACCACCCATGGTGTCCGTCTTGTGGATAAGTACTGTGAAGCGTGGCGAACGGCAGACATGGCAGTCACAGGATTTGCCTCGCCACTGAACACGGGGAAGATTCTGGACCAGAAAGCATATAACTGTGCTAATAGGCTAATTGTTCTGTGTATTGAAAACAGTTTCATGACAGATGCTAGGAAGTAA

Related Sequences

XP_004865117.1 Protein

Col15a1 PREDICTED: collagen alpha-1(XV) chain [Heterocephalus glaber]

Length: 1361 aa      View alignments
>XP_004865117.1
MAPRSNWCRRLLLSISALLSAVTRTRVSTDSASQGHLDLTQLIGVPLPSSVSFVTGYNGFPAYSFGPGANIGRPARTLIPPAFFRDFAVSVMAKPSSTRGGVLFAVTDAFQKVIYLGLRLSGVQDGHQRVILYYTEPGSHLSHEAAVFSVPVMTNRWNHFAVIIQGEEVTLLMDCEEHSHVLFQRSSQPLTFEPSTGIFVGSAGATGLDKFTGSIQQLTIHADPRVPEELCEAQELSASGEGSGLQETDTVAETLEAITYTQALPKEAKVEPINIPPISSSPPPLEDMELSGEPVPEGTPETNLSISQHNSPEQGSGEILNDTLEQVHSLDGDAISDVGSGDRTFLGATEEQGSAATAIGEDEVTITTAREAEVSSVPTGGPTLVMSTLNPREGTAPGLEDEEGSAAVGAGEAEVPVSTAGEVESGSVSTVGPTLTMSTQSPREETTLGPGKEWLTSVAAPTEVPLSTPGEEEASGASTDNLAVLTPTVAPAHASRASTDGLAVPDDKEDLEPLATAGREETGSAPPDGLPLPVPTAAPEGRVTLAQLVHGEMEGQSGPEGEKVGTEAVGSGLGWALDIGSGSGDLVDQEEFLRGLPGPPGPPGLPGIPGKPGTDVLMGPPGSPGEDGAAGEPGLPGPEGEPGLDGAVGRPGMKGEKGARGPNGSVGEKGDPGNRGLPGPPGKNGQAGTPGVTGPPGPPGPPGPPGPGCATGLEFEDTEGSGNIRLLNEPRISRPTVSSGLKGDKGDQGPKGERGLDGISTVGPPGPRGPPGRIEILSSSLVNITHGSLNFSNIPELLGPPGPDGVPGLPGFPGPRGPKGDTGLPGFPGLKGEQGEKGEPGAILTGDVPLERLKGKKGEPGLHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGIKGAKGDRGIMMQGPPGLPGPPGPPGPPGAVVNIKGAVFPVPVRPHCKMPLGTTQPGDPELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGFKGEKGDSNGNFFVAGSPGLPGNPGLAGQKGETIIGPQGPPGIPGLPGPPGFGRPGAPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSSMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWRKLQLGELIPIPADSPPPPALSSNSYQLQPPLNPILSANYENPVLHLVALNMPFSGDIRADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAERYSLPIVNLKGQVLFNNWDSIFSGDGGQFNTHVPIYSFDGRDVLTDPSWPQKVVWHGSTTHGVRLVDKYCEAWRTADMAVTGFASPLNTGKILDQKAYNCANRLIVLCIENSFMTDARK