Details from NCBI annotation

Gene Symbol Clstn1
Gene Name calsyntenin 1
Entrez Gene ID 101706826

Database interlinks

Part of NW_004624818.1 (Scaffold)

For more information consult the page for NW_004624818.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLSTN1 ENSCPOG00000010014 (Guinea pig)

Gene Details

calsyntenin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008989, Guinea pig)

Protein Percentage 92.44%
CDS Percentage 89.91%
Ka/Ks Ratio 0.06865 (Ka = 0.0349, Ks = 0.5084)

CLSTN1 ENSG00000171603 (Human)

Gene Details

calsyntenin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000366513, Human)

Protein Percentage 92.24%
CDS Percentage 87.06%
Ka/Ks Ratio 0.04969 (Ka = 0.0381, Ks = 0.7659)

Clstn1 ENSMUSG00000039953 (Mouse)

Gene Details

calsyntenin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000036962, Mouse)

Protein Percentage 91.4%
CDS Percentage 86.22%
Ka/Ks Ratio 0.04785 (Ka = 0.0413, Ks = 0.8623)

Clstn1 ENSRNOG00000016398 (Rat)

Gene Details

calsyntenin 1 (Clstn1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047223, Rat)

Protein Percentage 91.89%
CDS Percentage 85.86%
Ka/Ks Ratio 0.03865 (Ka = 0.0382, Ks = 0.9873)

Genome Location

Sequence Coding sequence

Length: 3864 bp    Location: 2679726..2751653   Strand: +
>XM_004863923.1
ATGTCCTCTGCAGGTTCAGAGCCGGGTACAGGCGCAGTGACTGCCAAGGGCCACACCAAAGTGGCCTGGGAAGTTTGTGTCCCCTCCGAGTACCGCTGCACATCTCCTCTGTACAATGGAGCCGCTGAGTCTCAGGGCGCAGTGCCCCAGCGTGGGACGCTGCTGGGGTCCGGCAGCGAGAAGGGGCGCCGGGCCGGGACACAGGGAGAAGGGACGACCCCAGACGTCCCCGGCGTCCTCTGCGTTTGGGGGGCTGTGGCACCGTCGCAAGCCCCGCGGATCCCTCAGGAAGAGCCAGCACCGCCACCGCGAGTCCCCGTCCCCGTCCCCGACCTGAGCCGGCTGACCCCGGCCTCGGACGCCTCTCCCGACCCGAGCTCGCTCAGGTCCCCGCCCTCGGCAGAGGATGCCGCAGAGGTTCAGGGAGGGACGGGGCGGCCCGCAGGGAGGCGCTGGGGGGTCCGGGCTCCTCCGGGGTGCGAGGGCGGGGAGCCCGGGTCCTTCGGGTGCAGAGGAGGAGCGCCCCGGGCGTGGAGGCCCCAGCACCGCTCGGAGGCGCGCGTGGGGAATGAGGGGACAGCGACGAGGGGAGCGAGACTGGCGGGGCCGGGCGGGGGCGCGGCCCTGGGGGCCAATGGGGAGCCCGCCCTCGGGCGCGCCCCCTCCGGCCGCGCGCTCCCGCGTCCGCCTGGTGCGCGCGCGCCGGGCGCCGCTCCCTGCCCGCCCCCTCCCGCGCGCCGCGCCCGCCCCGCCCCGCCCTGCCGGTCCCCTTGCCGGACCGAAGCGCGCGCCGACGCCGCCGCCATTTTAGTCGCCGCCGCCGCCTCAGCGAAGCGCTGCTCGAGGCGGGAGGGCGCCGCGGCCGGAGCGGGCCCAGGGCTCGGCACGGCGCCTCCCGCTCTGCCCCCGGCCGCTCGCCGCGCCGCTCCGCAGCGGCCGGCCGCCGGGCTGCTGCTCGCCGGGCTGCTGTGCGGCGGCGGGGTCTGGGCCGCGCGAGTTAACAAGCATAAGCCCTGGCTGGAGCCCACCTACCACGGGATTGTGACTGAGAACGACAACACGGTGCTGCTCGACCCCCCCCTGATGGCGCTGGATAAGGACGCGCCTCTGCGCTTTGCAGAGAGTTATGAGGTGACAGTCACCAAAGAAGGTGAGATTTGTGGCTTTAAAATTCACGGGCAGAATGTCCCCTTTGATGCAGTGGTAGTGGATAAATCCACTGGCGAGGGGATAATTCGCTCCAAAGAGAAACTGGACTGTGAGCTGCAGAAAGACTACACATTCACCATCCAGGCCTACGACTGCGGGAAGGGCCCCGACGGCACCAGCATGAAGAAGTCTCATAAATCAACTGTCCACATCCAGGTGAACGATGTGAATGAGTATGCGCCTGTGTTCAAGGAGAAGTCCTACAAGGCGACGGTCACCGAGGGCAAGCAGTATGACAGCATCCTGAGGGTGGAGGCCGTGGACGCAGACTGCTCCCCTCAGTTCAGTCAGATCTGCAGCTATGACATCGTCACTCCTGATGTGCCCTTCGCTGTGGACAAAGATGGTTACATAAAGAACACCGAGAAGCTGAACTATGGGAAGGAGCGTCAGTATAAGCTGACCGTCACGGCCTATGACTGTGGGAAGAAGAGGGCTACGGAAGATGTTCTGGTGAAGATCAGCATCAAGCCTGCCTGCACACCTGGGTGGCAAGGCTGGAGCAACAGGGTTGAATACGAACCTGGCACCGGCGCTCTGGCTGTCTTCCCCAACATCCACCTGGAGACGTGTGACGAGCCAGTGGCCTCAGTGCAGGCCACGGTGGAGCTGGAGACCAGCCACATCGGGAAGGGCTGCGACCGAGATACCTACTCTGAGAAGTCCCTCCACAGGCTGTGCGGGGCTGCTGCGGGCACCGCCGAGCTGCTTCCCTCCCCTGGCAGCTCCTTCAACTGGACCGTTGGCCTCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACTCAGGCAGTGAGGATCCCAGATGGTGTTGTGTCCATCAGCCCTAAGGAGCCCTTTACGATTTCCGTGTGGATGAGGCACGGGCCTTTCGGCAGGAGGAAGGAGACGATTCTTTGCAGTTCGGACAAGACAGATATGAACCGACATCACTACTCGCTCTATATCCATGGGTGCAGGCTGATTTTCCTCCTGCGTCAGGATCCTTCCGAGGAGAAGAAATACAAACCTGCAGAATTCCACTGGAAGTTGAATCAGGTCTGTGATGAGGAATGGCACCACTTCGTCCTCAACGTGGAGCTCCCGAGTGTGACTCTGTACGTGGATGGCGTTTCCCATGAGCCCTTCTCTGTGACCGAGGATTATCCACTCCATCCATCCAAGATAGACACCCAGCTCGTGGTTGGGGCTTGCTGGCAAGAGTATTCAGGAGTTGAAAATGACAATGACACTGAACCTGTGACTGTGGCCTCCGCAGGAGGTGACCTGCACATGACCCAGTTTTTCCGAGGGAACCTGGCCGGCCTAACCGTCCGGACCGGAAAACTCGCAGACAAGAAGGTGATCGACTGTCTGTACACCTGCAAAGAGGGGTTGGACCTCCAGGTCCCCGAGGACAGCAGCGCCGTGCAGGTCCGACCCAGCCCCGGCCAGTCGGTGTTGACTCTGGAGGGTGATGACATTGGGGAGCTAGACAAGGCCATGCAACACCTCTCCTACCTGAACTCGCGGCAGTTCCCCACGCCGGGCATCCGGAGACTCAGAGTCACCAGCACGGTCAAGTGCTTTCATGAGGCCACCACCTGCATCCAGGTCCCCCCAGTCGAGGGCTACGTGATGGTTTTGCAGCCTGAAGAGCCCAAGATCAGCCTCAGCGGCGTCCACCATTTTGCCCGTGCGGCTTCTGAGTTTGAGAGCTCCGAGGGGGTCTTCCTGTTCCCCGAGCTGCGGATCATCAGCACCATCACGAGGGAGGTGGAGCCCGAGGGGGACGGGGCCGAGGACCCCACAGTCCAAGAGTCCCTGGTGTCTGAGGAGGTTGTGCATGACCTGGATACCTGCGAGGTCACAGTGGAGGGAGAGGAGCTGAACCTGGAGCAGGAGAGCCTGGAGGTGGACGAGGCCCGGCTGCAGCAGAAGGGCATCGAAGTGAGCCGCTCGGGCCTGGGCATGGTCCTCAGAGGGGTGGAGACCATGGTCAGCTATGAGGAGGTTTTGCACCTCCTTCGATATCGGAACTGGCATACCAGGTCCCTGCTTGATCGGAAGTTCAAGCTCATCTGCTCTGAGCTGAATGGTCGCTACCTGAGTAATGAGTTTAAGGTGGAGGTGAACGTGATCCATACGGCCAACCCTGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTTGTTCACCCTGAACATCACTCCTTTGTGGACCTCTCAGGTCACAACCTGGCCAGTCCTCACCCATTCGCAGTGGTCCCCAGCACCGCCACTGTGGTGATCGTGGTGTGCGTCAGCTTCCTGGTTTTCATGATCATCCTGGGAGTGTTTCGGATCCGGGCTGCACACCAGCGAACGATGCGGGACCAGGACACGGGGAAGGAGAATGAGATGGACTGGGACGACTCTGCGCTGACCATCACCGTGAACCCCATGGAGACGTATGAGGACCAGCACAGCAGTGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAGCGAGGATGGGGAGGAGGAGGAGGAGGAGGACATCACCAGTGCGGAGTCAGAGAGCAGTGAGGAGGAGGGCGGCCCTGGCGATGGCCAGAACGCGACCCGGCAGCAGCAGCTGGAGTGGGACGATTCCACGCTCAGCTACTGA

Related Sequences

XP_004863980.1 Protein

Clstn1 PREDICTED: calsyntenin-1 [Heterocephalus glaber]

Length: 1287 aa      View alignments
>XP_004863980.1
MSSAGSEPGTGAVTAKGHTKVAWEVCVPSEYRCTSPLYNGAAESQGAVPQRGTLLGSGSEKGRRAGTQGEGTTPDVPGVLCVWGAVAPSQAPRIPQEEPAPPPRVPVPVPDLSRLTPASDASPDPSSLRSPPSAEDAAEVQGGTGRPAGRRWGVRAPPGCEGGEPGSFGCRGGAPRAWRPQHRSEARVGNEGTATRGARLAGPGGGAALGANGEPALGRAPSGRALPRPPGARAPGAAPCPPPPARRARPAPPCRSPCRTEARADAAAILVAAAASAKRCSRREGAAAGAGPGLGTAPPALPPAARRAAPQRPAAGLLLAGLLCGGGVWAARVNKHKPWLEPTYHGIVTENDNTVLLDPPLMALDKDAPLRFAESYEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCELQKDYTFTIQAYDCGKGPDGTSMKKSHKSTVHIQVNDVNEYAPVFKEKSYKATVTEGKQYDSILRVEAVDADCSPQFSQICSYDIVTPDVPFAVDKDGYIKNTEKLNYGKERQYKLTVTAYDCGKKRATEDVLVKISIKPACTPGWQGWSNRVEYEPGTGALAVFPNIHLETCDEPVASVQATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTAELLPSPGSSFNWTVGLPTDNGHDSDQVFEFNGTQAVRIPDGVVSISPKEPFTISVWMRHGPFGRRKETILCSSDKTDMNRHHYSLYIHGCRLIFLLRQDPSEEKKYKPAEFHWKLNQVCDEEWHHFVLNVELPSVTLYVDGVSHEPFSVTEDYPLHPSKIDTQLVVGACWQEYSGVENDNDTEPVTVASAGGDLHMTQFFRGNLAGLTVRTGKLADKKVIDCLYTCKEGLDLQVPEDSSAVQVRPSPGQSVLTLEGDDIGELDKAMQHLSYLNSRQFPTPGIRRLRVTSTVKCFHEATTCIQVPPVEGYVMVLQPEEPKISLSGVHHFARAASEFESSEGVFLFPELRIISTITREVEPEGDGAEDPTVQESLVSEEVVHDLDTCEVTVEGEELNLEQESLEVDEARLQQKGIEVSRSGLGMVLRGVETMVSYEEVLHLLRYRNWHTRSLLDRKFKLICSELNGRYLSNEFKVEVNVIHTANPVEHANHMAAQPQFVHPEHHSFVDLSGHNLASPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEEEEESEDGEEEEEEDITSAESESSEEEGGPGDGQNATRQQQLEWDDSTLSY