Details from NCBI annotation

Gene Symbol Hps5
Gene Name Hermansky-Pudlak syndrome 5, transcript variant X1
Entrez Gene ID 101714520

Database interlinks

Part of NW_004624766.1 (Scaffold)

For more information consult the page for NW_004624766.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HPS5 ENSCPOG00000004341 (Guinea pig)

Gene Details

Hermansky-Pudlak syndrome 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003914, Guinea pig)

Protein Percentage 88.92%
CDS Percentage 89.41%
Ka/Ks Ratio 0.25008 (Ka = 0.0676, Ks = 0.2702)

HPS5 ENSG00000110756 (Human)

Gene Details

Hermansky-Pudlak syndrome 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000265967, Human)

Protein Percentage 85.73%
CDS Percentage 87.57%
Ka/Ks Ratio 0.25666 (Ka = 0.0832, Ks = 0.3241)

Hps5 ENSMUSG00000014418 (Mouse)

Gene Details

Hermansky-Pudlak syndrome 5 homolog (human)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000014562, Mouse)

Protein Percentage 80.62%
CDS Percentage 82.05%
Ka/Ks Ratio 0.21354 (Ka = 0.1159, Ks = 0.5426)

Hps5 ENSRNOG00000012232 (Rat)

Gene Details

Hermansky-Pudlak syndrome 5 (Hps5), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016444, Rat)

Protein Percentage 79.84%
CDS Percentage 81.76%
Ka/Ks Ratio 0.2373 (Ka = 0.1242, Ks = 0.5232)

Genome Location

Sequence Coding sequence

Length: 3096 bp    Location: 9808079..9768638   Strand: -
>XM_004851528.1
ATGACTTTTGTGCCCACGATCCCAGAGTCTTACAGCCATGTTCTCGCGGAGCTTGAGTCCCTGGACCCGTTACTTTCAGCTCTGCGGCTGGACTCCAGTCGTCTAAAGTGCACCAGCATAGCTGTGTCTCGGAAATGGCTGGCCTTGGGCAGCTCGGGAGGAGGAGTCAATCTCATTCAGAAAGAAGGCTGGAAGCACAGGCTTTTTCTCTCGCACCGGGAAGGTTCAATTTCTCAGGTTGCCTGTTGTTCACATGATGACGATTATGTTGCTGTAGCTACCAGTCAAGGTCTTGTAGTTGTTTGGGAATTAAATCAAGAGCATCGTGGGAAACCAGAACGAATTTATGTGTCTTCAGAACACAAAGGCCGAAAAGTTACAGCTCTCTGTTGGGATACAGCTGTTCTTAGAATCTTTGTAGGTGACCATGTGGGGAAAGTTTCTGCCATCAAACTCCACACTTCTAAACAAGCAAAGGCAGCTTCTGTCTTTGTGATGTTTCCTGTTCAGACAATAACAACAGTCGACTCCTGTGTTGTCCAGCTAGATTATTTGGATGGAAGGCTCCTTGTATCTTCCCTTACTCGAGCCTTCTTGTGTGACACTGAGAGAGAGAAGTTTTGGAAAATTGGAAACAAGGAAAGAAATGGAGAATATGGAGCTTGTTTCTTCCCTGGAAGGTGTTCTGGGGGCCAGCAACCTCTAATATATTGTGCTCGTCCTGGCTCCAGGATGTGGGAAGTGAGCTTTGATGGGGAAGTTAGAAGTACACATCAGTTCAAGAAACTCCTCTCGTTGCCACCTCTTCCTGTGATTACTCCAAGATCTGAACCTCAGTATGATCATACAGTGGGATCCTCCCAGTCTTTGTCTTTCCCCAGACTCTTGCATCTTAGTGAGCATTGTGTGCTGACTTGGACAGAAAAAGGAATTTATATTTTTATTCCTCAGAATGTTCAAGTTCTTCTTTGGAGTGAAGTCAAAGATATTCAGGATGTGGCTGTCTACAAGAATGAGCTGTTCTGTTTGCACCTGAACGGGAAAGTCTCACATCTTTCTCTGCTGTCTGTGGAGCGCTGTGTGGAACGTCTGCTAAGGAGAGGTCTGTGGGTTCTGGCTGCTCGCACATGCTATCTGTTCCAAAATTCCATTGTTGCCAGCAAGGCAAGAAAAACTTTGACTATAGATAAATTGGAGCACTTGAAGTCTCAGCTGGATCTTGAAACTTATAGTGATCTCATTCCTCAACTGGATGAATTGATATTGAAATTTGAACCTTTGGATTCAGCTTGCAGCAGTAGAAGAAGCTCTATTTCATCACATGAGAGTTTCAGCATCTTGGACTCTGGTATTTATCGTATCATTAGTAGTAGAAGAGGCAGTCAGTCAGATGAAGATTCTTGCTCCCTTCACAGCCAAACCTTCTCGGAAGATGAGAGACTTAAAGAATTCACCTCACATCCAGAAGAGGACCAGCCAGACAATGTTTCTCATGTTCCAGTGACGTTTGAGACAGATAAGAATGAAACTTTTCTCCCCTTCGGCATTCCATTACCATTTCGTTCTCCATCTCCTCTTGTATCTCTTCAGGCTGTCAAAGACAGTGTTTCTAGCTTTGTGCGTAAAACTACTGAGAAGATTGGTACCCTTCACACAAGTCCTGAGCTAAAAGTGAGACCAGAACCCAGGGATGAAGATCAGTCTTGCGAAGAGGAAGTGAGTTCAGTTACATGCCCACAGGAAGAAGTCACTGAGGAGAAAAAAGAAGTAATTAGTCAACCCCCAAAAGAAGACAGGTTCCAAGAGCTCACAGCAGCAACAGCAGAAGCAATGACCAAGCTACTGGACCCTTTGGTTTTGTTTGAACCCCAGTCTCTGAGAGTGGTTTTACAAGAGTGGCTTTCACACTTAGAAAGGACATTTGCCATGAGAGACTCTCCAGGCACTTCAGATACTGGCAACTCACTTGTGAAACTGAACCAAGATGAGTCAAAAAAGAGAATAGTGGGTGAAGATAATGAAGGAGAAAAAAGGGACTCTTTAGACAATGAAGAAACTGTTGACCCAACAGCGTGTGAATCCATAAATAGTCCAAGGGAGCCCTCGGATGATGACCTTTTCCAAGTGTGTTCCCCATGCGCCATACCAACCAGTCTTCAGAAGGACCTGGCTGAGTTGACAGCATTGTGTTTGGAATTGAACGTTTTGAATTCTGCTATCAAAAGCACGGATGGACATGCAGACCATACTTTGCAACAGTGTTCACCTGAAATTCTGGCTTGTCAGTTTGTAAAGAAGTACTTTTTTCTCCTGGATTTGAAAAGAACAAAAGAGAGTATCAAGCTTAGTTATACTAGCAGCTCCCGTATTTGGGATACTTTCATTGAAGGATTGAAAGAAATGGCCAGTTCTAACCCTACTTATATGGAGATGGGAGAAGGAGACCTACCAACAAGATTAAAGTTATTGGATGACTCCATTCCTTTTGATAGTCCTTTGTTGATTGCTTATGCCACCCGGTTATATGAGAAGTTTGGAGAATCTGCCCTTCGATCCTTGATCAGGTTTTATCCATCCATTTTGCCTTCAGACATCATACAACTTTGTCGTCATCATCCAGCTCAGTTTCTGGCCTATTTAGATAGTTTGGTGAAATCAAGACCTGAAGACCAGCGGTCATCTTTCCTAGAGTCCCTTCTGCAACCAGAGTCCTTAAGATTAGATTGGCTACTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACCAGTACTGTGGATGATGAAGGGTACCCCAGGCCTCATTCGCACTTGTTCTCCTGGGGTTACAGTCAACTGATCCTTTATCTAATTAAACTTCCTGCAGATTTTACAACCAAAGAGAAAATGACAGACATCTGTAAGTCTTGTGGTTTCTGGCCTGGATATCTAACTCTGTGCTGGGAGCTGGAGAGAAGAAGAGAGGCGTTTGCCAACATCGTGTATCTGAATGATATGAGCCTGATGTCAGGGGACAATGGTGCGTATGTCCCAGTGGATTACTCTTGCAGGTGGTATTTTACAAGTCTCTCTAGACTTTTTCATAAAGAAATGTGGTGA

Related Sequences

XP_004851585.1 Protein

Hps5 PREDICTED: Hermansky-Pudlak syndrome 5 protein isoform X1 [Heterocephalus glaber]

Length: 1031 aa      View alignments
>XP_004851585.1
MTFVPTIPESYSHVLAELESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGVNLIQKEGWKHRLFLSHREGSISQVACCSHDDDYVAVATSQGLVVVWELNQEHRGKPERIYVSSEHKGRKVTALCWDTAVLRIFVGDHVGKVSAIKLHTSKQAKAASVFVMFPVQTITTVDSCVVQLDYLDGRLLVSSLTRAFLCDTEREKFWKIGNKERNGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVSFDGEVRSTHQFKKLLSLPPLPVITPRSEPQYDHTVGSSQSLSFPRLLHLSEHCVLTWTEKGIYIFIPQNVQVLLWSEVKDIQDVAVYKNELFCLHLNGKVSHLSLLSVERCVERLLRRGLWVLAARTCYLFQNSIVASKARKTLTIDKLEHLKSQLDLETYSDLIPQLDELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTFSEDERLKEFTSHPEEDQPDNVSHVPVTFETDKNETFLPFGIPLPFRSPSPLVSLQAVKDSVSSFVRKTTEKIGTLHTSPELKVRPEPRDEDQSCEEEVSSVTCPQEEVTEEKKEVISQPPKEDRFQELTAATAEAMTKLLDPLVLFEPQSLRVVLQEWLSHLERTFAMRDSPGTSDTGNSLVKLNQDESKKRIVGEDNEGEKRDSLDNEETVDPTACESINSPREPSDDDLFQVCSPCAIPTSLQKDLAELTALCLELNVLNSAIKSTDGHADHTLQQCSPEILACQFVKKYFFLLDLKRTKESIKLSYTSSSRIWDTFIEGLKEMASSNPTYMEMGEGDLPTRLKLLDDSIPFDSPLLIAYATRLYEKFGESALRSLIRFYPSILPSDIIQLCRHHPAQFLAYLDSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSHDAPPSTSTVDDEGYPRPHSHLFSWGYSQLILYLIKLPADFTTKEKMTDICKSCGFWPGYLTLCWELERRREAFANIVYLNDMSLMSGDNGAYVPVDYSCRWYFTSLSRLFHKEMW