Details from NCBI annotation

Gene Symbol Prpf6
Gene Name pre-mRNA processing factor 6
Entrez Gene ID 101704761

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF6 ENSCPOG00000007518 (Guinea pig)

Gene Details

pre-mRNA processing factor 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006785, Guinea pig)

Protein Percentage 99.79%
CDS Percentage 94.51%
Ka/Ks Ratio 0.00399 (Ka = 0.001, Ks = 0.2448)

PRPF6 ENSG00000101161 (Human)

Gene Details

pre-mRNA processing factor 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000266079, Human)

Protein Percentage 97.87%
CDS Percentage 90.61%
Ka/Ks Ratio 0.02334 (Ka = 0.0112, Ks = 0.4782)

Prpf6 ENSMUSG00000002455 (Mouse)

Gene Details

PRP6 pre-mRNA splicing factor 6 homolog (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000002529, Mouse)

Protein Percentage 99.47%
CDS Percentage 90.29%
Ka/Ks Ratio 0.0048 (Ka = 0.0024, Ks = 0.5092)

Prpf6 ENSRNOG00000015600 (Rat)

Gene Details

pre-mRNA processing factor 6 (Prpf6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021723, Rat)

Protein Percentage 99.47%
CDS Percentage 90.29%
Ka/Ks Ratio 0.00577 (Ka = 0.0029, Ks = 0.5094)

Genome Location

Sequence Coding sequence

Length: 2826 bp    Location: 29601046..29664054   Strand: +
>XM_004841124.1
ATGAACAAGAAGAAGAAACCGTTCCTGGGCATGCCCGCGCCGCTCGGCTATGTGCCGGGGCTGGGCCGCGGTGCCACTGGCTTCACTACCCGCTCAGACATTGGGCCTGCCCGGGATGCAAATGATCCTGTGGACGATCGCCATGCACCACCAGGCAAAAGAACCGTGGGGGACCAGATGAAGAAAAACCAGGCTGCTGATGATGATGATGAGGATCTGAATGACACCAACTATGATGAGTTTAATGGTTATGCTGGGAGCCTCTTCTCAAGTGGACCCTATGAAAAAGATGATGAGGAAGCAGATGCTATTTATGCAGCTCTGGATAAAAGGATGGATGAAAGAAGGAAAGAAAGGAGAGAACAAAGGGAGAAAGAAGAGATTGAGAAATACAGAATGGAACGCCCCAAAATCCAGCAACAGTTCTCAGATCTCAAAAGGAAGTTGGCAGAGGTCACAGAAGAAGAGTGGCTGAGCATCCCGGAGGTCGGCGATGCCAGAAACAAACGTCAGCGGAATCCACGTTATGAGAAGCTGACCCCTGTTCCTGATAGCTTTTTCGCCAAACATTTACAGACGGGGGAGAACCATACTTCTGTGGATCCCCGGCAAACTCAATTTGGAGGTCTGAACACACCCTATCCAGGCGGGCTGAACACGCCATATCCAGGTGGAATGACCCCGGGCCTGATGACACCTGGCACGGGGGAGCTGGACATGAGGAAGATTGGGCAAGCGAGGAACACCCTGATGGACATGAGGTTGAGCCAGGTGTCTGACTCGGTGAGTGGACAGACTGTTGTGGACCCCAAAGGCTATCTGACAGATCTAAACTCTATGATCCCGACCCATGGAGGGGACATCAATGATATCAAGAAGGCGCGGCTGCTCCTCAAGTCTGTTCGAGAGACAAATCCTCATCACCCACCAGCCTGGATTGCCTCTGCACGGCTGGAGGAAGTCACTGGGAAGCTGCAAGTGGCTCGGAACCTTATTATGAAGGGGACAGAGATGTGCCCCAAGAGTGAAGATGTCTGGCTAGAAGCAGCCAGGTTGCAGCCTGGGGACACAGCTAAGGCTGTTGTGGCCCAGGCAGTCCGTCATCTCCCACAGTCTGTTAGGATTTACATCAGAGCAGCAGAGCTAGAAACAGACATTCGTGCAAAGAAGCGGGTTCTTCGGAAAGCCCTAGAGCATGTTCCAAACTCTGTTCGCTTGTGGAAAGCAGCTGTTGAGCTGGAAGAGCCTGAAGATGCTAGAATCATGCTCAGCCGAGCTGTGGAGTGCTGCCCCACCAGTGTAGAGCTCTGGCTTGCTCTGGCGAGGCTGGAGACTTATGAAAATGCCCGCAAAGTCTTAAATAAGGCACGTGAGAACATTCCTACAGACCGGCACATCTGGATCACAGCTGCCAAGCTTGAGGAGGCCAATGGGAACACTCAGATGGTGGAGAAGATCATTGACAGAGCTATCACCTCACTGCGGGCCAATGGTGTGGAGATCAACCGTGAGCAGTGGATCCAGGATGCTGAGGAGTGTGACAGGGCAGGGAGCGTGGCCACCTGCCAAGCAGTCATGCGTGCCGTGATTGGCATCGGGATTGAAGAAGAAGACCGGAAGCACACCTGGATGGAAGATGCTGACAGTTGTGTAGCCCACAATGCCCTGGAGTGTGCACGAGCTATCTATGCCTATGCCCTGCAAGTGTTCCCCAGCAAGAAGAGTGTGTGGCTACGAGCTGCGTACTTTGAAAAAAATCACGGCACCAGGGAGTCTCTGGAAGCACTTCTGCAGAGGGCTGTGGCCCACTGCCCCAAGGCAGAGGTGCTGTGGCTCATGGGTGCCAAATCCAAGTGGCTGGCAGGGGATGTGCCGGCAGCAAGGAGCATCTTGGCCTTGGCCTTCCAGGCCAACCCCAACAGTGAGGAGATCTGGTTGGCAGCTGTGAAGCTGGAGTCAGAGAACAATGAGTACGAGCGGGCCCGAAGGCTGCTGGCCAAGGCACGGAGCAGTGCGCCCACAGCTCGAGTGTTTATGAAGTCTGTGAAGCTGGAGTGGGTGCTGGGGAACATTGCAGCTGCCCAGGAGCTGTGTGAGGAGGCACTGAAGCACTATGAGGACTTCCCCAAGCTGTGGATGATGAAAGGGCAAATTGAGGAGCAGGGGGAGCTGATGGAGAATGCTCGAGAAGCCTACAACCAGGGGCTGAAGAAGTGCCCCCACTCCACACCCCTGTGGCTCTTGCTTTCCCGGCTAGAGGAGAAGATTGGGCAGCTGACCCGAGCACGGGCCATTTTGGAGAAGTCTCGTCTGAAGAACCCAAAGAACCCTGGCCTGTGGTTGGAGTCTGTGAGGCTGGAGTACCGTGCAGGGCTGAAGAACATTGCCAATACGCTCATGGCCAAGGCATTGCAGGAATGCCCCAACTCTGGTATCCTGTGGTCTGAAGCTGTCTTCCTTGAGGCCCGGCCGCAGAGAAAGACCAAGAGCGTGGATGCCCTGAAGAAGTGTGAGCATGACCCTCACGTGCTGTTGGCTGTGGCCAAGCTGTTCTGGAGTGAGCGGAAGATCACCAAGGCCCGGGAGTGGTTCCACCGCACAGTGAAGATTGATTCAGACCTGGGGGATGCCTGGGCTTTCTTCTACAAGTTTGAGCTGCAGCACGGCACCGAGGAGCAGCAGGAGGAGGTGAGGAAACGCTGTGAGAATGCAGAGCCCCGGCATGGGGAGCTGTGGTGCACCGTGTCCAAGGACATCACCAACTGGCAGAGGAAGATTGGGGAGATCCTGGTGCTGGTGGCTGCTCACATCAAGAACACATTCTGA

Related Sequences

XP_004841181.1 Protein

Prpf6 PREDICTED: pre-mRNA-processing factor 6 [Heterocephalus glaber]

Length: 941 aa      View alignments
>XP_004841181.1
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEEQGELMENAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCTVSKDITNWQRKIGEILVLVAAHIKNTF