Details from NCBI annotation

Gene Symbol Col20a1
Gene Name collagen, type XX, alpha 1
Entrez Gene ID 101714112

Database interlinks

Part of NW_004624741.1 (Scaffold)

For more information consult the page for NW_004624741.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL20A1 ENSCPOG00000021624 (Guinea pig)

Gene Details

collagen, type XX, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014940, Guinea pig)

Protein Percentage 78.49%
CDS Percentage 82.16%
Ka/Ks Ratio 0.269 (Ka = 0.1383, Ks = 0.514)

COL20A1 ENSG00000101203 (Human)

Gene Details

collagen, type XX, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000351767, Human)

Protein Percentage 78.72%
CDS Percentage 81.76%
Ka/Ks Ratio 0.18635 (Ka = 0.1242, Ks = 0.6665)

Col20a1 ENSMUSG00000016356 (Mouse)

Gene Details

collagen, type XX, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000104484, Mouse)

Protein Percentage 74.32%
CDS Percentage 78.36%
Ka/Ks Ratio 0.21498 (Ka = 0.157, Ks = 0.7303)

Col20a1 ENSRNOG00000010326 (Rat)

Gene Details

Protein Col20a1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000049790, Rat)

Protein Percentage 73.79%
CDS Percentage 77.95%
Ka/Ks Ratio 0.21312 (Ka = 0.1606, Ks = 0.7536)

Genome Location

Sequence Coding sequence

Length: 4107 bp    Location: 28990376..29017938   Strand: +
>XM_004841048.1
ATGAACCCCCAAGGCCACCCCGCCCTCCACTTCTGCCTCTGGCTGTGGCTGGGTGCCATCTCCACACGTGGGCAGGGACAAGGAGGTGGCCGCCTGAGGCTGGCCGTGCTGCCCGAGGACCGGCTGCAGATGAAGTGGCGAGACCTGCAGGGCGGCGGCCTCGGCTATCTGGTGCAGGTGAAGCCCATGGCAGGGGACTCAGAGCAGGAAGTGATGCTGACCACCAAGACCCCCAAGGCCACCGTCGGGGGCCTGAGCCCCTCCAAGGGCTACATCTTGCAGATATTTGAGCTCACTGGCTCGGAGCCCACCCTGCTGGTGCGGAGGGAGTTTGTGATCAAGGATCTGAAGAGTAAGCCCCTGAGCAGGAGTGGCCAGAGGCCACCAGGGACAGCCCTAAAGCCTCTACCCTCCCACATGGGGGGCCCGGGCCCCAAGCAGACCCCTGAGCCCAGCATCACCTTTGTGCCCAGCCAAGAGCCGCCTGTGCTTGCTGGCCCCCAGTTCCGCTGCACACCCCCCACGCCCACCGACATGGTCTTCCTGGTGGACGGGTCCTGGAGTGTCGGCCACAGCCACTTCCAGCTAGTCAAAGACTTCCTGGCCAGCGTCATCTCACCCTTTGAAATTGGGCCCAATCAAGTCCAAGTAGGCCTGACTCAGTACAGCGGAGACCCCCAGACTGAGTGGGACCTGAACTCCTTCCGCACCAGGGAGGAGGTGCTGGCCGCTGTGCACAGCCTTCGCTACAAGGGAGGAAACACATTCACAGGCCTCGCCCTGAGCCACGTGCTGGGGTACAACCTGAAGCCGGCGGCAGGTCTCCGTGCAGAGGCGGCTCACTTGGTGATCCTGGTGACGGATGGCAAGTCCCAGGACGATGTGCATGCAGCTGCACACACCCTCCAGGGCCTGGACGTCGAGGTCTTCACTGTGGGGGTGAAGAATGCCGACGAGGCTGAGCTGAAGCTCCTGGCCTCCCAGCCGCAGGACATCACCGTCCACAACGTGCTGGACTTCCCCCAGCTGGCCACCCTGGCTGGCCTGCTCAGCCGCCTCATCTGCCAGCAGGTCCAGGGCTGGAACCTGAGCAGGGCCCCAGCCACGTGGGCCCCAGCCGCTCCAGCTCTGGACACCCTCCCCGTCCCCACCAGCCTGGTGGTGACCCAGGTCACCTCCTCCAGCATCCGCCTGTCCTGGTCGCCGGCCCCTCAGCCGCCCCTCAAGTATCTCATCGTGTGGCGGCCTTCCAGGGGTGGCGTCCACCGGGAGGTGGTGGTGGAGGGGCCTGCAGCATCCACAGAGCTTCGGAACCTGAGCTCCAGCACCGAGTATTTGGTGTCTGTGCTCCCTGTCTATGAGGCCGGGGTCGGCGAGGGCCTGCAGGGCCTGGCGACCACAGCACCCCTCCCTCCACCCCGGGCGCTAACCCTGGCTGCAGTGACACCCAGGACCCTCCGCCTCACCTGGCAGCCCTCGGCTGGGGCCAGGCAGTACTTGGTGCGGTGCTCGCCAGCCTTCCCCAAGGGTGGGGAGGAGGAGATTGAGGTGCGGGTGGGGCAGCCAGAGGTGCTGCTGGATGGCCTGGAACCGGGCAGGGACTACATGGTCTCCGTGCAAAGCCTTCAAGGGCCAGAGGCCAGCGAGGCCCGGGGTGTCCACGCCAGAACCCCCGCCCTGGCCCCCCCAAGACACCTGGGCTTCTCAGACGTGAGCCACGACTCAGCCCGTGTGACCTGGGAAGGCACCCAGCGGCCCACATACCTGGTCAGGGTCAGCTACATCTCCAGCGACGGTGGCCACTCGGGACAGAAAGAGGCGCCTGGGAATGCCACCTCGGCCACCCTGGGCCCCCTGTCCTCCTCCACCACATACACTGTCCGAGTCACCTCCGTCCACCGGGGAGGCAGCTCCTCCACGCTGACCGGCCAGGTGACCACAGGGAAAGTGCCCAGCCCAAGCCAGCTGTCTGTGACAGAACTGCCAGGGAATGCAGTCAGGCTGACGTGGGCAGCTTCGGCCCCAACCGGCGTGCTTGTCTACCAGATCAAGTGGACTCCCCTGGGAGAGGGGAAGGCCCACGAGATCTCTGTGCCAGGCACTCTCAGCACAGCTGTCCTGCCCGGCCTGGGGAGGCACGAGGAATACGAAATCACCATCCTGGCCTACTACAGGGATGGGGCCCGCAGTGACCCTGTGTCCCTCCACTATACACCCCCTGCAGTGAGCAGGAGCCCCCCCTCAGGCCTGACCCTGTCCTTGGAGACCCCCAACAGCCTGCACGTCAGCTGGACACCCCCAAGTGGCCCCGTGCTCCACTACCGGGTCACCTATGCGCCAGCCTCGGGCTCAGGACCTGAGAAATCAATCTCCGTGGCAGGTCACAGGGGCCAGGCCACGCTCCCTGACCTGCTGGCTGCCACCAAGTACAAGGTCCTGGTCTCAGCTGTCTACGCAGTAGGGGAGAGTGTGGCTGTGTCTGCCACAGGCCGAACAGCAGCCTGCCCTGCCCTTCGCTGGAACAGCTCCCTTCCAGGGTTTGACCTGATGCTGGCTTTCGGCCTGGTGGAGAAGGAGTACGCCTCCATTCGAGGTGTGGCCATGGAGCCTTCGCCTTGGGGTGGGACCCCGACCTTCACACTCTTCAAGGATGCTCAGCTGACGCGGCGGGCCAGCGACATCCACGCCGCCGCGCTCCCGCCGGAGCACACCATCGTCTTCCTTCTGCGCCTGCTCCCCGAGGCGCCCCGCGAGGCCTTCGCGCTGTGGCAGATGACAGCCGAGGACTTCCAGCCTGTCCTCGGCATTCTTCTGGACGCCAGCAGGAAGTCGCTGACCTACTTCAACCACGACCCGAGGGCCGCCTTGCAGGAGGTCACCTTTGACCTGCAGGAGGTGAAGAAGATTTTCTTCGGGAGCTTCCACAAGGTTCATGTGGCTGTGGGCCGCACCAAGGTCAGACTCTACGTGGACTGCCGGAAGGTGGCCGAGAGGCCCATGGGAGAGGCTGGCAGGTCGCCCATCACCGGCTTTGTCACCCTGGGGAGGCTGGCCAAGGCACGGGGACCCCGGAGCAGCTCGGCCACATTCCAGCTCCAGATGCTGCAGATTCTGTGCAGTGACACCTGGGCAGACGAGGACGGGTGCTGTGAGCTCCCTGCTTTGAGGGACAAAGAGACGTGTCCGGCCTTCTCTTCTGCCTGTTCCTGTTCCTCTGACACCACTGGGCCCCCGGGGCCCCAAGGGCCTCCAGGCCCCCCAGGCAGGAACGGCACCCCAGGACAGCAGGGCCTCCCGGGGCCTAAGGGAGAGCCAGGGCCACCAGGACAGACAGGACCAGAGGGCCCTGGGGGACAGCAGGGGTCACCAGGGACTCAGGGCCGTGCAATCCAGGGGCCTGTGGGTCCACCGGGGGTCAAAGGAGAGAAGGGCGACCATGGCCTCCCGGGCTTGCAGGGCCACCCTGGCCAGCAAGGCGCTCCTGGGAGAGTTGGGCTCCAAGGACCAAAGGGAACGAGAGGACTGGAGGGGCCTGCTGGCCTGCCTGGACCCCCAGGCCCCCGGGGATTCCAGGGCTCAGCGGGAGCCAGGGGAACCAATGGGGAGCGAGGGCCCCCAGGGGCTGTGGGGCCCACGGGGCTTCCAGGACCCAAAGGGGAGCGAGGGGAGAAGGGGGAGCCTCAGTCCCTCACCACCATCTTCCAGCTGGTGAGCCAGGCCTGCGAGTCAGCCATCCAGACACATGTGCTCAAGCTGGACTCCTTCCTCCATGAGAACTCCAGGCCCCCGATGCCCATCCTGGTCGAGACAGTAGAGCCAGGCAGGCCTGGGCCCCTGGGGACCCCCAGCCTTCGAAGCAAGGCCTCACTTCCTGGAGAACAGGGGCGCAGGGACCACCGTCCTGAGCACCAAGGCCAGCCTGTAGCTGTCAGCCAGCCGGGCAGCCCTGGGCCCAGGGTAGCCGGGCCCCAGCATCCCAGGAGGGGACAGGACGCGCCCCGTGCTGCCTCGAGTGACCCTGGGCCTTCCGCCCGCACCTTCCCCTGGGTGTCTGGACACTGGGAGAAGAGTCCTGGCGAGGCGAGAATGAGGCCCCAGGAAGAGTGA

Related Sequences

XP_004841105.1 Protein

Col20a1 PREDICTED: collagen alpha-1(XX) chain [Heterocephalus glaber]

Length: 1368 aa      View alignments
>XP_004841105.1
MNPQGHPALHFCLWLWLGAISTRGQGQGGGRLRLAVLPEDRLQMKWRDLQGGGLGYLVQVKPMAGDSEQEVMLTTKTPKATVGGLSPSKGYILQIFELTGSEPTLLVRREFVIKDLKSKPLSRSGQRPPGTALKPLPSHMGGPGPKQTPEPSITFVPSQEPPVLAGPQFRCTPPTPTDMVFLVDGSWSVGHSHFQLVKDFLASVISPFEIGPNQVQVGLTQYSGDPQTEWDLNSFRTREEVLAAVHSLRYKGGNTFTGLALSHVLGYNLKPAAGLRAEAAHLVILVTDGKSQDDVHAAAHTLQGLDVEVFTVGVKNADEAELKLLASQPQDITVHNVLDFPQLATLAGLLSRLICQQVQGWNLSRAPATWAPAAPALDTLPVPTSLVVTQVTSSSIRLSWSPAPQPPLKYLIVWRPSRGGVHREVVVEGPAASTELRNLSSSTEYLVSVLPVYEAGVGEGLQGLATTAPLPPPRALTLAAVTPRTLRLTWQPSAGARQYLVRCSPAFPKGGEEEIEVRVGQPEVLLDGLEPGRDYMVSVQSLQGPEASEARGVHARTPALAPPRHLGFSDVSHDSARVTWEGTQRPTYLVRVSYISSDGGHSGQKEAPGNATSATLGPLSSSTTYTVRVTSVHRGGSSSTLTGQVTTGKVPSPSQLSVTELPGNAVRLTWAASAPTGVLVYQIKWTPLGEGKAHEISVPGTLSTAVLPGLGRHEEYEITILAYYRDGARSDPVSLHYTPPAVSRSPPSGLTLSLETPNSLHVSWTPPSGPVLHYRVTYAPASGSGPEKSISVAGHRGQATLPDLLAATKYKVLVSAVYAVGESVAVSATGRTAACPALRWNSSLPGFDLMLAFGLVEKEYASIRGVAMEPSPWGGTPTFTLFKDAQLTRRASDIHAAALPPEHTIVFLLRLLPEAPREAFALWQMTAEDFQPVLGILLDASRKSLTYFNHDPRAALQEVTFDLQEVKKIFFGSFHKVHVAVGRTKVRLYVDCRKVAERPMGEAGRSPITGFVTLGRLAKARGPRSSSATFQLQMLQILCSDTWADEDGCCELPALRDKETCPAFSSACSCSSDTTGPPGPQGPPGPPGRNGTPGQQGLPGPKGEPGPPGQTGPEGPGGQQGSPGTQGRAIQGPVGPPGVKGEKGDHGLPGLQGHPGQQGAPGRVGLQGPKGTRGLEGPAGLPGPPGPRGFQGSAGARGTNGERGPPGAVGPTGLPGPKGERGEKGEPQSLTTIFQLVSQACESAIQTHVLKLDSFLHENSRPPMPILVETVEPGRPGPLGTPSLRSKASLPGEQGRRDHRPEHQGQPVAVSQPGSPGPRVAGPQHPRRGQDAPRAASSDPGPSARTFPWVSGHWEKSPGEARMRPQEE